Calothrix sp. 336/3

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix sp. 336/3 is characterized by having four replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic diversity. The organism is documented under several accession numbers: NZ_CP011382.1, NZ_CP011383.1, NZ_CP011385.1, and NZ_CP011384.1. These accessions refer to its genomic sequences available in public databases, which can provide insight into its genetic makeup and potential functions. As a member of the genus Calothrix, this species is likely to be a filamentous cyanobacterium, known for its capability to perform photosynthesis and nitrogen fixation. Cyanobacteria play a crucial role in aquatic ecosystems and are significant contributors to primary production. The presence of multiple replicons may enhance the organism's ability to regulate various metabolic pathways, potentially allowing it to thrive in diverse environmental conditions. The genetic information accessible through its accession numbers can be instrumental for further research into its ecological roles, such as its interactions within microbial communities and its contributions to nutrient cycling. Understanding the genomics of Calothrix sp. 336/3 can offer insights into how this organism adapts to its environment and supports ecosystem functioning, particularly in nutrient-limited settings where cyanobacteria often prevail.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix sp. 336/3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix sp. 336/3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1849674 bp

Thymine Count

1854813 bp

Guanine Count

1288898 bp

Cytosine Count

1289882 bp

Genome Length

6283267 bp

Protein-coding Genes

5311 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseIJ00_RS00010Not AvailablePositive341 - 114729016.1
bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family proteinIJ00_RS00015Not AvailablePositive1585 - 346870541.2
duf1517 domain-containing proteinIJ00_RS00020Not AvailableNegative3617 - 457633915.2
catb-related o-acetyltransferaseIJ00_RS00025Not AvailableNegative4763 - 540124014.6
hypothetical proteinIJ00_RS28620Not AvailablePositive5711 - 58575362.31
tetratricopeptide repeat proteinIJ00_RS00030Not AvailableNegative5946 - 711543583.2
methyltransferase type 11IJ00_RS00035Not AvailableNegative7368 - 803025394.9
hypothetical proteinIJ00_RS00040Not AvailableNegative8168 - 881823756.7
mgpme-cyclase complex family proteinIJ00_RS00045Not AvailableNegative8976 - 930212559.1
hypothetical proteinIJ00_RS00050Not AvailableNegative9454 - 1017927248.9

Displaying genes 1 – 10 of 5512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

24 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0003107S-inosyl-L-homocysteineC14H19N5O6SChemical structure of S-inosyl-L-homocysteineNot available
Average385.396Da
Monoisotopic385.1056041Da
BASm0003335L-glutamyl 5-phosphateC5H8NO7PChemical structure of L-glutamyl 5-phosphateNot available
Average225.094Da
Monoisotopic225.0049358Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da

Displaying 1–10 of 24 metabolites

Health Effects

No health effects information available for this bacterium.