Calothrix sp. 336/3

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Nostocales

Family

Calotrichaceae

Genus

Calothrix

Description

Calothrix sp. 336/3 is characterized by having four replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic diversity. The organism is documented under several accession numbers: NZ_CP011382.1, NZ_CP011383.1, NZ_CP011385.1, and NZ_CP011384.1. These accessions refer to its genomic sequences available in public databases, which can provide insight into its genetic makeup and potential functions. As a member of the genus Calothrix, this species is likely to be a filamentous cyanobacterium, known for its capability to perform photosynthesis and nitrogen fixation. Cyanobacteria play a crucial role in aquatic ecosystems and are significant contributors to primary production. The presence of multiple replicons may enhance the organism's ability to regulate various metabolic pathways, potentially allowing it to thrive in diverse environmental conditions. The genetic information accessible through its accession numbers can be instrumental for further research into its ecological roles, such as its interactions within microbial communities and its contributions to nutrient cycling. Understanding the genomics of Calothrix sp. 336/3 can offer insights into how this organism adapts to its environment and supports ecosystem functioning, particularly in nutrient-limited settings where cyanobacteria often prevail.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyCalotrichaceae
GenusCalothrix
SpeciesCalothrix sp. 336/3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Calothrix sp. 336/3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Calothrix sp. 336/3 chromosome, complete genome.

Gene Summary

Adenine Count

1849674 bp

Thymine Count

1854813 bp

Guanine Count

1288898 bp

Cytosine Count

1289882 bp

Genome Length

6283267 bp

Protein-coding Genes

5311 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4189 domain-containing proteinIJ00_RS17940Not AvailablePositive4301209 - 430162815601.3
atp-binding cassette domain-containing proteinIJ00_RS17945Not AvailablePositive4301868 - 430284836406.7
3-oxoacyl-acp synthase iii family proteinIJ00_RS17950Not AvailablePositive4303650 - 430474139553.2
thiamine pyrophosphate-dependent enzymeIJ00_RS17955Not AvailableNegative4304792 - 430656464361.3
atp-binding sensor histidine kinaseIJ00_RS17960Not AvailableNegative4307951 - 4313413205341.0
atp-binding proteinIJ00_RS17965Not AvailableNegative4313777 - 431513851639.4
permeaseIJ00_RS17970Not AvailablePositive4315917 - 431696637940.8
tigr03943 family putative permease subunitIJ00_RS17975Not AvailablePositive4317107 - 431788029109.7
ig-like domain-containing proteinIJ00_RS17980Not AvailablePositive4318061 - 431956054682.7
hypothetical proteinIJ00_RS17985Not AvailablePositive4319785 - 432147663591.4

Displaying genes 3691 – 3700 of 5512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

24 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0003107S-inosyl-L-homocysteineC14H19N5O6SChemical structure of S-inosyl-L-homocysteineNot available
Average385.396Da
Monoisotopic385.1056041Da
BASm0003335L-glutamyl 5-phosphateC5H8NO7PChemical structure of L-glutamyl 5-phosphateNot available
Average225.094Da
Monoisotopic225.0049358Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da

Displaying 1–10 of 24 metabolites

Health Effects

No health effects information available for this bacterium.