Kosmotoga pacifica str. SLHLJ1

Gram-negativeRodanaerobic

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Kosmotogales

Family

Kosmotogaceae

Genus

Kosmotoga

Description

Kosmotoga pacifica strain SLHLJ1 is a Gram-negative, anaerobic bacterium that exhibits a rod-shaped morphology. This species is characterized by the presence of flagella, which likely contributes to its motility in anaerobic environments. The strain is notable for having a single replicon, a feature that can be indicative of its genomic organization and stability. The accession number for Kosmotoga pacifica str. SLHLJ1 is NZ_CP011232.1, which provides a reference for researchers looking to access its genetic information. This strain is part of the Kosmotoga genus, which is known for thriving in extreme environments, particularly in marine sediments and hydrothermal systems. From a biological and ecological perspective, the anaerobic nature of Kosmotoga pacifica str. SLHLJ1 suggests that it plays a role in the biogeochemical cycling of nutrients in anoxic environments. Its motility, facilitated by flagella, may enable it to navigate through sediment layers, allowing it to exploit organic matter efficiently. This adaptation is crucial for its survival and growth in low-oxygen conditions, highlighting the importance of anaerobic microorganisms in marine ecosystems and their potential contributions to nutrient cycling and energy flow in these habitats.

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderKosmotogales
FamilyKosmotogaceae
GenusKosmotoga
SpeciesKosmotoga pacifica
StrainSLHLJ1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Kosmotoga pacifica str. SLHLJ1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kosmotoga pacifica str. SLHLJ1


Gene Summary

Adenine Count

630267 bp

Thymine Count

616661 bp

Guanine Count

467082 bp

Cytosine Count

455160 bp

Genome Length

2169170 bp

Protein-coding Genes

2042 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isoleucine--trna ligaseIX53_RS00055C5CHA1Positive10877 - 13630105637.0
slbb domain-containing proteinIX53_RS00060Not AvailablePositive13645 - 18831188591.0
tyrosine-protein phosphataseIX53_RS00065P96717Positive18847 - 1954826951.4
polysaccharide biosynthesis tyrosine autokinaseIX53_RS00070O52788Positive19532 - 2178484874.2
zip family metal transporterIX53_RS00075Q06916Positive21781 - 2252426094.8
o-antigen ligase family proteinIX53_RS00080Not AvailablePositive22537 - 25317106665.0
methionine--trna ligaseIX53_RS00085O33925Positive25382 - 2730473458.7
dna gyrase subunit aIX53_RS00090C5CHA8Positive27329 - 2975590453.9
transcriptional repressor lexaIX53_RS00095A9BGA3Positive29773 - 3039923531.6
ribose 5-phosphate isomerase bIX53_RS00100P37351Positive30411 - 3086916829.2

Displaying genes 11 – 20 of 2095 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

122 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da

Displaying 1–10 of 122 metabolites

Health Effects

No health effects information available for this bacterium.