Cetobacterium somerae ATCC BAA-474

Gram-negativeAnaerobe

Kingdom

Fusobacteriati

Phylum

Fusobacteriota

Class

Fusobacteriia

Order

Fusobacteriales

Family

Fusobacteriaceae

Genus

Cetobacterium

Description

Cetobacterium somerae ATCC BAA-474 is a Gram-negative, rod-shaped bacterium that thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This microbe is a heterotroph, relying on organic compounds for its energy and carbon needs, which it obtains primarily from its environment. As an obligate anaerobe, Cetobacterium somerae can only grow in environments devoid of oxygen, making it particularly adaptable to specific niches within its habitats. Cetobacterium somerae is predominantly found in the gastrointestinal tracts of various aquatic organisms, especially freshwater fish. This suggests a significant ecological role, as it assists in the digestion of complex carbohydrates and proteins within its host's gut. The presence of such bacteria in the digestive systems of fish indicates a symbiotic relationship that enhances nutrient absorption and overall health of the host.The significance of Cetobacterium somerae extends beyond its role in fish digestion. Research has highlighted its potential in aquaculture, as it may contribute to the prevention of pathogenic bacteria, thereby promoting fish health. Furthermore, this microbe demonstrates unique metabolic capabilities, including the production of short-chain fatty acids, which serve as essential energy sources for the host.Studies also indicate that Cetobacterium somerae is of interest in biotechnology and environmental monitoring due to its ability to degrade various organic compounds. This characteristic could be harnessed for applications in waste treatment and bioremediation, showcasing its versatility and value in both natural ecosystems and industrial processes.

Taxonomy

KingdomFusobacteriati
PhylumFusobacteriota
ClassFusobacteriia
OrderFusobacteriales
FamilyFusobacteriaceae
GenusCetobacterium
SpeciesCetobacterium somerae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cetobacterium somerae ATCC BAA-474

Accession NumberAXZF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2975 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+2 - 1341Not Available
initiator repb proteinHMPREF0202_00001Not Available+65 - 123446488.9
Ncrna_class:ribozymeNot AvailableNot Available+180 - 324Not Available
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot Available+352 - 436Not Available
Ncrna_class:srp_rnaNot AvailableNot Available+791 - 889Not Available
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot Available+1766 - 1850Not Available
hypothetical proteinHMPREF0202_00002Not Available+2467 - 26617254.15
hypothetical proteinHMPREF0202_00003Not Available+2658 - 350932422.7
hypothetical proteinHMPREF0202_00004Not Available+3788 - 404310013.0
cell cycle protein, ftsw/roda/spove familyHMPREF0202_00005Not Available+4098 - 531545483.1

Displaying genes 1 – 10 of 3015 in total

Pathways

129 pathways

Metabolites

488 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 11–20 of 488 metabolites