Cetobacterium somerae ATCC BAA-474

Gram-negativeAnaerobe

Kingdom

Fusobacteriati

Phylum

Fusobacteriota

Class

Fusobacteriia

Order

Fusobacteriales

Family

Fusobacteriaceae

Genus

Cetobacterium

Description

Cetobacterium somerae ATCC BAA-474 is a Gram-negative, anaerobic bacterium. It is characterized by its ability to thrive in environments devoid of oxygen, which is a significant trait for its ecological niche. The organism possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in anaerobic conditions. The accession number for this strain is AXZF00000000.1, which provides a reference for genetic and genomic data associated with Cetobacterium somerae. As a member of the microbiota, this bacterium may play a role in the degradation of organic matter and the cycling of nutrients in anaerobic environments, such as sediments and the intestines of fish. Its anaerobic metabolism could be crucial for maintaining ecological balance in these habitats. The specific traits of Cetobacterium somerae highlight its role in anaerobic ecosystems, suggesting it may contribute to the processes of fermentation and decomposition. Understanding the characteristics of this bacterium further underscores the complexity of microbial life in oxygen-limited environments and emphasizes its potential significance in ecological and biogeochemical processes.

Taxonomy

KingdomFusobacteriati
PhylumFusobacteriota
ClassFusobacteriia
OrderFusobacteriales
FamilyFusobacteriaceae
GenusCetobacterium
SpeciesCetobacterium somerae
StrainATCC BAA-474

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cetobacterium somerae ATCC BAA-474

Gene Summary

Adenine Count

1078973 bp

Thymine Count

1109744 bp

Guanine Count

426478 bp

Cytosine Count

449453 bp

Genome Length

3064648 bp

Protein-coding Genes

2975 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii, subunit gamma and tauHMPREF0202_00024Not AvailablePositive23552 - 2500956007.8
hypothetical proteinHMPREF0202_00025Not AvailablePositive25067 - 2586430924.8
ribosomal protein l9HMPREF0202_00026Not AvailablePositive25885 - 2633116225.0
replicative dna helicaseHMPREF0202_00027Not AvailablePositive26338 - 2767849745.1
peptidase, u32 familyHMPREF0202_00028Not AvailablePositive27694 - 2892346299.3
peptidyl-prolyl cis-trans isomerase, cyclophilin-typeHMPREF0202_00029Not AvailableNegative28958 - 2974329946.5
putative spermidine/putrescine abc transporter, permease protein potcHMPREF0202_00030Not AvailableNegative29789 - 3056229092.6
putative spermidine/putrescine abc transporter, permease protein potbHMPREF0202_00031Not AvailableNegative30555 - 3140031460.8
putative spermidine/putrescine abc transporter, atp-binding protein potaHMPREF0202_00032Not AvailableNegative31401 - 3251942214.6
ribosomal subunit interface proteinHMPREF0202_00033Not AvailableNegative32650 - 3321021147.1

Displaying genes 31 – 40 of 3015 in total

Metabolites

582 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 582 metabolites

Health Effects

No health effects information available for this bacterium.