Xenorhabdus nematophila F1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila F1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. It is a non-motile organism, possessing flagella that are not utilized for movement. The bacterium thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This species is free-living and is typically found in host-associated habitats, suggesting a close relationship with its host organisms, which may include nematodes. X. nematophila F1 has a unique cellular structure, comprising two membranes and a single replicon, which is indicative of its classification within the broader group of Gram-negative bacteria. Notably, this bacterium does not undergo sporulation, which may influence its ecological interactions and survival strategies within its environment. The presence of X. nematophila F1 in host-associated habitats highlights its potential role in symbiotic relationships, particularly with nematodes. Such interactions can be significant in the soil ecosystem, where X. nematophila may contribute to nutrient cycling or biocontrol mechanisms against pests. Understanding the ecological roles of X. nematophila F1 can provide insights into its potential applications in agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila F1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila F1 WGS project CAVM000000000 data, contig

Gene Summary

Adenine Count

1191298 bp

Thymine Count

1184737 bp

Guanine Count

916098 bp

Cytosine Count

923543 bp

Genome Length

4215676 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trk system potassium uptake protein trkgXNC3_2730031Not AvailablePositive2780328 - 278178853655.6
conserved hypothetical proteinXNC3_2730032Not AvailableNegative2781884 - 27821479740.83
d-alanyl-d-alanine carboxypeptidase dacaXNC3_2730033Not AvailableNegative2782256 - 278346444210.0
rare lipoprotein aXNC3_2730034Not AvailableNegative2783673 - 278467736317.9
rod shape-determining protein rodaXNC3_2730035Not AvailableNegative2784690 - 278580240889.4
penicillin-binding protein 2XNC3_2730036Not AvailableNegative2785832 - 278770970587.5
ribosomal rna large subunit methyltransferase hXNC3_2730037Not AvailableNegative2787746 - 278821617519.4
conserved hypothetical proteinXNC3_2730038Not AvailableNegative2788219 - 278853611803.2
putative nicotinate-nucleotide adenylyltransferaseXNC3_2730039Not AvailableNegative2788641 - 278938128166.5
dna polymerase iii subunit deltaXNC3_2730040Not AvailableNegative2789374 - 279040539571.0

Displaying genes 2871 – 2880 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.