Xenorhabdus nematophila F1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila F1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. It is a non-motile organism, possessing flagella that are not utilized for movement. The bacterium thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This species is free-living and is typically found in host-associated habitats, suggesting a close relationship with its host organisms, which may include nematodes. X. nematophila F1 has a unique cellular structure, comprising two membranes and a single replicon, which is indicative of its classification within the broader group of Gram-negative bacteria. Notably, this bacterium does not undergo sporulation, which may influence its ecological interactions and survival strategies within its environment. The presence of X. nematophila F1 in host-associated habitats highlights its potential role in symbiotic relationships, particularly with nematodes. Such interactions can be significant in the soil ecosystem, where X. nematophila may contribute to nutrient cycling or biocontrol mechanisms against pests. Understanding the ecological roles of X. nematophila F1 can provide insights into its potential applications in agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila F1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila F1 WGS project CAVM000000000 data, contig

Gene Summary

Adenine Count

1191298 bp

Thymine Count

1184737 bp

Guanine Count

916098 bp

Cytosine Count

923543 bp

Genome Length

4215676 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protease 3XNC3_2660018Not AvailablePositive2611159 - 2614062108817.0
exodeoxyribonuclease v beta chainXNC3_2660019Not AvailablePositive2614059 - 2617775141059.0
exodeoxyribonuclease v alpha chainXNC3_2660020Not AvailablePositive2617772 - 261965869453.6
amino-acid acetyltransferaseXNC3_2660021Not AvailableNegative2619665 - 262099949635.7
n-acetylmuramoyl-l-alanine amidase amicXNC3_2660022Not AvailablePositive2621237 - 262248446382.4
Trna-metNot AvailableNot AvailablePositive2622902 - 2622978Not Available
membrane-bound lytic murein transglycosylase aXNC3_2670002Not AvailablePositive2623203 - 262429740958.8
conserved hypothetical proteinXNC3_2670003Not AvailablePositive2624366 - 262518129027.2
uncharacterized sufe-like protein ygdkXNC3_2670004Not AvailableNegative2625187 - 262564517171.8
cysteine sulfinate desulfinaseXNC3_2670005Not AvailableNegative2625664 - 262687244163.5

Displaying genes 2711 – 2720 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.