Xenorhabdus nematophila F1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila F1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. It is a non-motile organism, possessing flagella that are not utilized for movement. The bacterium thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This species is free-living and is typically found in host-associated habitats, suggesting a close relationship with its host organisms, which may include nematodes. X. nematophila F1 has a unique cellular structure, comprising two membranes and a single replicon, which is indicative of its classification within the broader group of Gram-negative bacteria. Notably, this bacterium does not undergo sporulation, which may influence its ecological interactions and survival strategies within its environment. The presence of X. nematophila F1 in host-associated habitats highlights its potential role in symbiotic relationships, particularly with nematodes. Such interactions can be significant in the soil ecosystem, where X. nematophila may contribute to nutrient cycling or biocontrol mechanisms against pests. Understanding the ecological roles of X. nematophila F1 can provide insights into its potential applications in agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila F1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila F1 WGS project CAVM000000000 data, contig

Gene Summary

Adenine Count

1191298 bp

Thymine Count

1184737 bp

Guanine Count

916098 bp

Cytosine Count

923543 bp

Genome Length

4215676 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome d ubiquinol oxidase subunit 2XNC3_2490051Not AvailableNegative2199451 - 220059042032.9
cytochrome d ubiquinol oxidase subunit 1XNC3_2490052Not AvailableNegative2200605 - 220217658393.5
succinyl-coa ligase (adp-forming) subunit alphaXNC3_2490053Not AvailableNegative2202822 - 220369129653.1
succinyl-coa ligase (adp-forming) subunit betaXNC3_2490054Not AvailableNegative2203691 - 220485741225.6
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complexXNC3_2490055Not AvailableNegative2205017 - 220622844157.2
2-oxoglutarate dehydrogenase e1 componentXNC3_2490056Not AvailableNegative2206242 - 2209049105408.0
succinate dehydrogenase iron-sulfur subunitXNC3_2490057Not AvailableNegative2209382 - 221009826766.4
succinate dehydrogenase flavoprotein subunitXNC3_2490058Not AvailableNegative2210136 - 221190264524.9
succinate dehydrogenase hydrophobic membrane anchor subunitXNC3_2490059Not AvailableNegative2211903 - 221225012842.2
succinate dehydrogenase cytochrome b556 subunitXNC3_2490060Not AvailableNegative2212244 - 221263313937.6

Displaying genes 2331 – 2340 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.