Xenorhabdus nematophila F1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila F1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. It is a non-motile organism, possessing flagella that are not utilized for movement. The bacterium thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This species is free-living and is typically found in host-associated habitats, suggesting a close relationship with its host organisms, which may include nematodes. X. nematophila F1 has a unique cellular structure, comprising two membranes and a single replicon, which is indicative of its classification within the broader group of Gram-negative bacteria. Notably, this bacterium does not undergo sporulation, which may influence its ecological interactions and survival strategies within its environment. The presence of X. nematophila F1 in host-associated habitats highlights its potential role in symbiotic relationships, particularly with nematodes. Such interactions can be significant in the soil ecosystem, where X. nematophila may contribute to nutrient cycling or biocontrol mechanisms against pests. Understanding the ecological roles of X. nematophila F1 can provide insights into its potential applications in agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila F1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila F1 WGS project CAVM000000000 data, contig

Gene Summary

Adenine Count

1191298 bp

Thymine Count

1184737 bp

Guanine Count

916098 bp

Cytosine Count

923543 bp

Genome Length

4215676 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdenum import atp-binding protein modcXNC3_2490032Not AvailableNegative2181963 - 218306641051.3
molybdenum transport system permease protein modbXNC3_2490033Not AvailableNegative2183021 - 218371325032.5
molybdate-binding periplasmic proteinXNC3_2490034Not AvailableNegative2183731 - 218450128252.8
putative niacin/nicotinamide transporter naipXNC3_2490035Not AvailablePositive2184644 - 218592146548.9
conserved exported hypothetical proteinXNC3_2490036Not AvailableNegative2186019 - 21861625057.43
transcriptional regulator modeXNC3_2490037Not AvailablePositive2186334 - 218712529266.6
putative molybdenum transport atp-binding protein modfXNC3_2490038Not AvailablePositive2187220 - 218870455974.1
conserved membrane hypothetical proteinXNC3_2490039Not AvailablePositive2188914 - 218974130632.8
2,3-bisphosphoglycerate-dependent phosphoglycerate mutaseXNC3_2490040Not AvailablePositive2189993 - 219074528539.8
phospho-2-dehydro-3-deoxyheptonate aldolase,phe-sensitiveXNC3_2490041Not AvailableNegative2190871 - 219192338493.1

Displaying genes 2311 – 2320 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.