Xenorhabdus nematophila F1

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila F1 is a Gram-negative bacterium characterized by its rod shape and facultative anaerobic oxygen requirement. It is a non-motile organism, possessing flagella that are not utilized for movement. The bacterium thrives in a mesophilic temperature range, indicating its preference for moderate temperatures. This species is free-living and is typically found in host-associated habitats, suggesting a close relationship with its host organisms, which may include nematodes. X. nematophila F1 has a unique cellular structure, comprising two membranes and a single replicon, which is indicative of its classification within the broader group of Gram-negative bacteria. Notably, this bacterium does not undergo sporulation, which may influence its ecological interactions and survival strategies within its environment. The presence of X. nematophila F1 in host-associated habitats highlights its potential role in symbiotic relationships, particularly with nematodes. Such interactions can be significant in the soil ecosystem, where X. nematophila may contribute to nutrient cycling or biocontrol mechanisms against pests. Understanding the ecological roles of X. nematophila F1 can provide insights into its potential applications in agriculture and pest management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainF1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila F1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus nematophila F1 WGS project CAVM000000000 data, contig

Gene Summary

Adenine Count

1191298 bp

Thymine Count

1184737 bp

Guanine Count

916098 bp

Cytosine Count

923543 bp

Genome Length

4215676 bp

Protein-coding Genes

3890 genes

Non-Coding Genes

280 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide export system atp-binding protein lptbXNC3_2140017Not AvailableNegative1636109 - 163683426841.6
lipopolysaccharide export system protein lptaXNC3_2140018Not AvailableNegative1636841 - 163738919899.9
lipopolysaccharide export system protein lptcXNC3_2140019Not AvailableNegative1637370 - 163796321804.8
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase kdscXNC3_2140020Not AvailableNegative1637981 - 163854420330.8
arabinose 5-phosphate isomerase kdsdXNC3_2140021Not AvailableNegative1638684 - 163965234293.0
inner membrane protein yrbgXNC3_2140022Not AvailableNegative1639691 - 164067735263.4
putative phospholipid import atp-binding protein mlafXNC3_2140023Not AvailablePositive1640909 - 164171229199.7
putative phospholipid abc transporter permease protein mlaeXNC3_2140024Not AvailablePositive1641717 - 164250528142.4
putative phospholipid abc transporter-binding protein mladXNC3_2140025Not AvailablePositive1642510 - 164302218588.4
putative phospholipid-binding protein mlacXNC3_2140026Not AvailablePositive1643056 - 164368523758.7

Displaying genes 1871 – 1880 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.