Sphingobium indicum BiD32

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum BiD32 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This species is free-living and thrives in terrestrial habitats, exhibiting mesophilic growth with an optimal temperature of 28°C. It possesses a unique cellular structure, featuring two membranes and a single replicon, which are common traits among Gram-negative bacteria. The flagella present in Sphingobium indicum BiD32 contribute to its motility, although it is noted that the organism is classified as non-motile, suggesting that other factors may influence its movement or that its flagella may not be actively used for locomotion. The ecological role of Sphingobium indicum BiD32 may be significant in soil environments, particularly in nutrient cycling and biodegradation processes, although specific interactions in its habitat remain to be fully described. Understanding its metabolic capabilities and ecological interactions could provide insights into soil health and microbial diversity. The accession number for this strain is CAVK000000000.1, which allows for further study and characterization within microbial databases. Overall, Sphingobium indicum BiD32 represents a unique bacterium with potential implications for environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainBiD32

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum BiD32
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium japonicum BiD32 WGS project CAVK000000000 data, contig

Gene Summary

Adenine Count

896313 bp

Thymine Count

890938 bp

Guanine Count

1507905 bp

Cytosine Count

1492765 bp

Genome Length

4788005 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseEBBID32_40310Not AvailableNegative4080905 - 408201741135.4
acylaminoacyl-peptidaseEBBID32_40320Not AvailableNegative4082274 - 408371052705.2
inorganic pyrophosphataseEBBID32_40330Not AvailableNegative4083875 - 408441419793.6
pdz domain family proteinEBBID32_40340Not AvailableNegative4084452 - 408638371194.4
histidyl-trna synthetaseEBBID32_40350Not AvailablePositive4086526 - 408785148227.4
hypothetical proteinEBBID32_40360Not AvailablePositive4088183 - 408926240772.5
fig041266: atp-dependent nuclease subunit bEBBID32_40370Not AvailableNegative4090671 - 4093640107262.0
fig006611: nucleotidyltransferaseEBBID32_40380Not AvailableNegative4093633 - 409434325688.5
cog3178: predicted phosphotransferase related to ser/thr protein kinasesEBBID32_40390Not AvailableNegative4094340 - 409532635963.0
atpase yjee, predicted to have essential role in cell wall biosynthesisEBBID32_40400Not AvailableNegative4095323 - 409578116380.6

Displaying genes 4031 – 4040 of 4720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.