Sphingobium indicum BiD32

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum BiD32 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This species is free-living and thrives in terrestrial habitats, exhibiting mesophilic growth with an optimal temperature of 28°C. It possesses a unique cellular structure, featuring two membranes and a single replicon, which are common traits among Gram-negative bacteria. The flagella present in Sphingobium indicum BiD32 contribute to its motility, although it is noted that the organism is classified as non-motile, suggesting that other factors may influence its movement or that its flagella may not be actively used for locomotion. The ecological role of Sphingobium indicum BiD32 may be significant in soil environments, particularly in nutrient cycling and biodegradation processes, although specific interactions in its habitat remain to be fully described. Understanding its metabolic capabilities and ecological interactions could provide insights into soil health and microbial diversity. The accession number for this strain is CAVK000000000.1, which allows for further study and characterization within microbial databases. Overall, Sphingobium indicum BiD32 represents a unique bacterium with potential implications for environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainBiD32

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum BiD32
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium japonicum BiD32 WGS project CAVK000000000 data, contig

Gene Summary

Adenine Count

896313 bp

Thymine Count

890938 bp

Guanine Count

1507905 bp

Cytosine Count

1492765 bp

Genome Length

4788005 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lactoylglutathione lyase and related lyasesEBBID32_38710Not AvailablePositive3931491 - 393188313489.1
hypothetical proteinEBBID32_38720Not AvailableNegative3932034 - 393312840096.1
hypothetical proteinEBBID32_38730Not AvailableNegative3933173 - 39333014332.44
phosphoribosylaminoimidazole carboxylase catalytic subunitEBBID32_38740Not AvailablePositive3934626 - 393513217206.0
phosphoribosylaminoimidazole carboxylase atpase subunitEBBID32_38750Not AvailablePositive3935141 - 393621137568.6
dihydrofolate reductaseEBBID32_38760Not AvailablePositive3936208 - 393671718296.0
riboflavin kinase / fmn adenylyltransferaseEBBID32_38770Not AvailablePositive3936761 - 393770233483.3
isoleucyl-trna synthetaseEBBID32_38780Not AvailablePositive3937829 - 3940750108575.0
lipoprotein signal peptidaseEBBID32_38790Not AvailablePositive3940894 - 394140919040.8
fig00635890: hypothetical proteinEBBID32_38800Not AvailablePositive3941406 - 394181913585.0

Displaying genes 3871 – 3880 of 4720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.