Sphingobium indicum BiD32

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium indicum BiD32 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology and the presence of flagella. This species is free-living and thrives in terrestrial habitats, exhibiting mesophilic growth with an optimal temperature of 28°C. It possesses a unique cellular structure, featuring two membranes and a single replicon, which are common traits among Gram-negative bacteria. The flagella present in Sphingobium indicum BiD32 contribute to its motility, although it is noted that the organism is classified as non-motile, suggesting that other factors may influence its movement or that its flagella may not be actively used for locomotion. The ecological role of Sphingobium indicum BiD32 may be significant in soil environments, particularly in nutrient cycling and biodegradation processes, although specific interactions in its habitat remain to be fully described. Understanding its metabolic capabilities and ecological interactions could provide insights into soil health and microbial diversity. The accession number for this strain is CAVK000000000.1, which allows for further study and characterization within microbial databases. Overall, Sphingobium indicum BiD32 represents a unique bacterium with potential implications for environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium indicum
StrainBiD32

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sphingobium indicum BiD32
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature28
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium japonicum BiD32 WGS project CAVK000000000 data, contig

Gene Summary

Adenine Count

896313 bp

Thymine Count

890938 bp

Guanine Count

1507905 bp

Cytosine Count

1492765 bp

Genome Length

4788005 bp

Protein-coding Genes

4671 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c, class iEBBID32_13490Not AvailablePositive1358951 - 135964925039.9
cytochrome c, class icEBBID32_13500Not AvailablePositive1359649 - 136003813793.6
copper-containing nitrite reductaseEBBID32_13510Not AvailablePositive1360066 - 136098933455.1
tonb-dependent receptorEBBID32_13520Not AvailablePositive1361236 - 136317971181.0
putative rna polymerase sigma factor proteinEBBID32_13530Not AvailableNegative1363254 - 136395525950.3
gtp cyclohydrolase i type 1EBBID32_13540Not AvailableNegative1363965 - 136461823641.3
hypothetical proteinEBBID32_13550Not AvailablePositive1364775 - 136530218750.3
nnrs protein involved in response to noEBBID32_13560Not AvailableNegative1365683 - 136688243932.1
type cbb3 cytochrome oxidase biogenesis protein ccos, involved in heme b insertionEBBID32_13570Not AvailableNegative1366928 - 13670775453.66
fupa27 p-type atpaseEBBID32_13580Not AvailableNegative1367074 - 136927276884.0

Displaying genes 1351 – 1360 of 4720 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.