Nocardioides dokdonensis FR1436

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides dokdonensis FR1436 is a Gram-positive, aerobic bacterium characterized by its rod shape and non-motile nature. This species thrives in sand sediment, indicating a preference for environments that are likely well-aerated and nutrient-rich. The organism is classified as mesophilic, with an optimal growth temperature of 25°C, which suggests it is well-suited to moderate temperature conditions typically found in its natural habitat. Nocardioides dokdonensis FR1436 is notable for its genetic simplicity with only one replicon identified. Additionally, it is non-spore-forming, which may influence its survival strategies in fluctuating environmental conditions. These traits suggest that N. dokdonensis may rely on its immediate habitat for sustenance and may not have developed mechanisms for long-term survival in harsh conditions that would typically prompt sporulation in other bacterial species. The ecological role of Nocardioides dokdonensis FR1436 in sand sediment habitats may involve contributing to the degradation of organic materials and recycling of nutrients within the ecosystem. Its aerobic nature implies that it plays a part in the biogeochemical cycling of elements such as carbon and nitrogen, particularly in well-oxygenated environments. Understanding this species' specific functions in its ecosystem can provide insights into microbial community dynamics and the overall health of sediment habitats. The genomic accession number for this organism is NZ_CP015079.1, which may serve as a resource for further research into its genetic characteristics and ecological interactions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides dokdonensis
StrainFR1436

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatsand sediment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides dokdonensis FR1436


Gene Summary

Adenine Count

607500 bp

Thymine Count

606780 bp

Guanine Count

1576761 bp

Cytosine Count

1585666 bp

Genome Length

4376707 bp

Protein-coding Genes

4113 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dead/deah box helicaseI601_RS00370Not AvailablePositive78711 - 8018653219.4
l,d-transpeptidaseI601_RS00375Not AvailableNegative80317 - 8096122185.4
para family proteinI601_RS00380Not AvailableNegative80968 - 8175928143.6
sdr family oxidoreductaseI601_RS00385Not AvailablePositive81821 - 8261228470.2
php domain-containing proteinI601_RS00390Not AvailableNegative82616 - 8348830142.4
duf6758 family proteinI601_RS00395Not AvailableNegative83526 - 8416422481.6
gaf and antar domain-containing proteinI601_RS00400Not AvailablePositive84298 - 8498124893.7
hypothetical proteinI601_RS21640Not AvailableNegative85023 - 8600034375.7
response regulator transcription factorI601_RS00410Not AvailablePositive86098 - 8678425317.2
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferaseI601_RS00415Not AvailablePositive86887 - 8829350698.1

Displaying genes 81 – 90 of 4173 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.