Nocardioides dokdonensis FR1436

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides dokdonensis FR1436 is a Gram-positive, aerobic bacterium characterized by its rod shape and non-motile nature. This species thrives in sand sediment, indicating a preference for environments that are likely well-aerated and nutrient-rich. The organism is classified as mesophilic, with an optimal growth temperature of 25°C, which suggests it is well-suited to moderate temperature conditions typically found in its natural habitat. Nocardioides dokdonensis FR1436 is notable for its genetic simplicity with only one replicon identified. Additionally, it is non-spore-forming, which may influence its survival strategies in fluctuating environmental conditions. These traits suggest that N. dokdonensis may rely on its immediate habitat for sustenance and may not have developed mechanisms for long-term survival in harsh conditions that would typically prompt sporulation in other bacterial species. The ecological role of Nocardioides dokdonensis FR1436 in sand sediment habitats may involve contributing to the degradation of organic materials and recycling of nutrients within the ecosystem. Its aerobic nature implies that it plays a part in the biogeochemical cycling of elements such as carbon and nitrogen, particularly in well-oxygenated environments. Understanding this species' specific functions in its ecosystem can provide insights into microbial community dynamics and the overall health of sediment habitats. The genomic accession number for this organism is NZ_CP015079.1, which may serve as a resource for further research into its genetic characteristics and ecological interactions.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides dokdonensis
StrainFR1436

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatsand sediment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides dokdonensis FR1436 chromosome, complete genome.

Gene Summary

Adenine Count

607500 bp

Thymine Count

606780 bp

Guanine Count

1576761 bp

Cytosine Count

1585666 bp

Genome Length

4376707 bp

Protein-coding Genes

4113 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
luxr c-terminal-related transcriptional regulatorI601_RS00420Not AvailableNegative88339 - 8899523965.8
duf4910 domain-containing proteinI601_RS00425Not AvailableNegative89219 - 9056849395.4
cdp-glucose 4,6-dehydrataseI601_RS00430Not AvailablePositive90618 - 9167638154.6
glutamate-1-semialdehyde 2,1-aminomutaseI601_RS00435Not AvailableNegative91673 - 9301047803.9
pig-l deacetylase family proteinI601_RS00440Not AvailableNegative93007 - 9366924170.8
right-handed parallel beta-helix repeat-containing proteinI601_RS00445Not AvailablePositive93840 - 9541455479.9
srpbcc domain-containing proteinI601_RS00450Not AvailablePositive95440 - 9588615914.0
sugar phosphate nucleotidyltransferaseI601_RS00455Not AvailableNegative95920 - 9675030930.2
class i sam-dependent methyltransferaseI601_RS00460Not AvailableNegative96784 - 9801344606.2
dtdp-4-dehydrorhamnose 3,5-epimerase family proteinI601_RS00465Not AvailablePositive98179 - 9873620333.9

Displaying genes 91 – 100 of 4173 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.