Mycobacterium xenopi 3993

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycobacterium

Description

Mycobacterium xenopi 3993 is a notable species within the Mycobacterium genus, distinguished by its possession of flagella, which contribute to its motility. This characteristic is significant as it may affect the bacterium's ecological interactions and pathogenicity. M. xenopi 3993 has a single replicon, indicating a streamlined genome organization that may facilitate efficient replication and regulation. The genomic data for this species is documented under the accession number JAOC00000000.1, providing a reference point for further research and analysis. The presence of flagella suggests that Mycobacterium xenopi 3993 may have adaptations that allow it to navigate its environment more effectively, potentially influencing its survival and distribution in various ecological niches. In an ecological context, the motility provided by flagella may enhance the bacterium's ability to colonize new areas, access nutrients, or evade host defenses. Understanding these traits is crucial for comprehending the organism's role in its environment and its implications for human health, particularly as some mycobacteria are known to be opportunistic pathogens. The study of Mycobacterium xenopi 3993 could provide insights into the behavior and ecology of mycobacterial species more broadly.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium xenopi
Strain3993

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mycobacterium xenopi 3993 GMX3993.contig.36, whole genome shotgun

Gene Summary

Adenine Count

906299 bp

Thymine Count

899778 bp

Guanine Count

1740295 bp

Cytosine Count

1741305 bp

Genome Length

5287678 bp

Protein-coding Genes

10090 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinI552_6999Not AvailableNegative4313792 - 43140258684.29
putative membrane proteinI552_7000Not AvailableNegative4314279 - 431461111567.5
delta-aminolevulinic acid dehydratase family proteinI552_7001Not AvailableNegative4314892 - 43150896715.13
delta-aminolevulinic acid dehydratase family proteinI552_7002Not AvailableNegative4315089 - 431551114887.3
uroporphyrinogen-iii synthase hemd family proteinI552_7003Not AvailableNegative4315492 - 431748371007.2
porphobilinogen deaminase, c-terminal domain proteinI552_7004Not AvailableNegative4317517 - 431798116642.1
porphobilinogen deaminase, dipyromethane cofactor binding domain proteinI552_7005Not AvailableNegative4318056 - 431843913378.0
hypothetical proteinI552_7006Not AvailableNegative4318769 - 43188914267.06
glutamyl-trna reductase domain proteinI552_7007Not AvailableNegative4318881 - 43191178194.64
glutamyl-trna reductaseI552_7008Not AvailableNegative4319260 - 431982019752.8

Displaying genes 8511 – 8520 of 10262 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

116 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da

Displaying 1–10 of 116 metabolites

Health Effects

No health effects information available for this bacterium.