Idiomarinaceae bacterium HL-53

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Description

Idiomarinaceae bacterium HL-53 is a microbial organism notable for its single-replicon genomic structure. This characteristic can influence its genetic stability and adaptability within various environments. The organism is cataloged under the accession number LIHO00000000.1, which provides a reference for its genomic data and facilitates further research into its properties and potential applications. The family Idiomarinaceae is known for its members' ability to thrive in saline environments, suggesting that Idiomarinaceae bacterium HL-53 may possess specialized adaptations for osmoregulation and survival in high-salt conditions. Such traits are essential for organisms living in extreme environments, often leading to unique metabolic pathways and interactions with their ecosystems. Understanding the genetic makeup and environmental adaptations of Idiomarinaceae bacterium HL-53 can provide insights into the ecological roles of similar bacteria in saline habitats. These microorganisms may contribute to biogeochemical processes, such as nutrient cycling and organic matter degradation, in coastal and marine ecosystems. Additionally, studying the traits of this bacterium can enhance our knowledge of microbial diversity and the adaptability of life forms in extreme conditions.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Idiomarinaceae bacterium HL-53 ITZY_scaf_423, whole genome

Gene Summary

Adenine Count

705796 bp

Thymine Count

706916 bp

Guanine Count

652738 bp

Cytosine Count

624702 bp

Genome Length

2690152 bp

Protein-coding Genes

2551 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease mhaHLUCCO02_01420B5Y1G2Negative1118369 - 111886318538.8
dna polymerase iii epsilon subunit dnaqHLUCCO02_01425P0A1H0Positive1118902 - 111963327128.9
synaphin proteinHLUCCO02_01430Not AvailablePositive1119612 - 112094950869.7
Trna-aspNot AvailableNot AvailablePositive1121074 - 1121150Not Available
Trna-aspNot AvailableNot AvailablePositive1121197 - 1121273Not Available
Trna-aspNot AvailableNot AvailablePositive1121294 - 1121370Not Available
ggdef domain proteinHLUCCO02_01450Not AvailableNegative1121402 - 112347480108.1
dna polymerase iii alpha subunit dnaeHLUCCO02_01455P52022Positive1123682 - 1127137129687.0
acetyl-coa carboxylase complex carboxyl transferase alpha subunit accaHLUCCO02_01460Q5QZP1Positive1127153 - 112810935382.7
trna(ile)-lysidine synthase tilsHLUCCO02_01465Q5R0Q7Positive1128149 - 112908435687.2

Displaying genes 1091 – 1100 of 2608 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

160 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 160 metabolites

Health Effects

No health effects information available for this bacterium.