Vibrio sp. JCM 18905

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18905 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for its adaptability and efficiency in replication and gene expression. The organism is cataloged under the accession number BAYS00000000.1, which serves as a reference for genomic studies and comparisons within the Vibrio genus. Vibrio species are known for their diverse ecological roles, often found in marine environments. While specific ecological interactions for Vibrio sp. JCM 18905 are not detailed, members of the Vibrio genus are typically associated with aquatic ecosystems and can play roles as pathogens, symbionts, or essential components of marine microbiomes. The presence of a single replicon may suggest a potential for rapid adaptation to environmental changes, as the simplicity of its genomic architecture can facilitate quicker evolutionary responses. This trait could be advantageous in fluctuating marine environments, where competition and resource availability can change rapidly. In summary, Vibrio sp. JCM 18905, with its single replicon and designated genomic reference, exemplifies characteristics that may contribute to its ecological versatility in marine ecosystems. Understanding these traits can provide insights into how Vibrio species adapt and thrive in diverse aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18905
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18905 DNA, contig: JCM18905.contig00064, whole

Gene Summary

Adenine Count

1407233 bp

Thymine Count

1435234 bp

Guanine Count

1189180 bp

Cytosine Count

1124897 bp

Genome Length

5156544 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion chaperone protein for yopdJCM18905_831Not AvailablePositive841063 - 84154818103.3
type iii secretion host injection protein yopbJCM18905_832Not AvailablePositive841556 - 84269839383.7
type iii secretion host injection and negative regulator protein yopdJCM18905_833Not AvailablePositive842709 - 84371335305.8
trap transporter solute receptor, taxi family precursorJCM18905_834Not AvailablePositive844773 - 84574935060.6
predicted permeaseJCM18905_835Not AvailableNegative846058 - 84682826781.6
adenylate kinaseJCM18905_836Not AvailableNegative846939 - 84742717831.3
tricarboxylate transport membrane protein tctaJCM18905_837Not AvailableNegative847704 - 84905353655.5
tricarboxylate transport protein tctbJCM18905_838Not AvailableNegative849252 - 84974918479.1
tricarboxylate transport protein tctcJCM18905_839Not AvailableNegative849992 - 85096234904.5
gfa-like proteinJCM18905_841Not AvailablePositive851222 - 85162014685.4

Displaying genes 851 – 860 of 4816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.