Vibrio sp. JCM 18905

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18905 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for its adaptability and efficiency in replication and gene expression. The organism is cataloged under the accession number BAYS00000000.1, which serves as a reference for genomic studies and comparisons within the Vibrio genus. Vibrio species are known for their diverse ecological roles, often found in marine environments. While specific ecological interactions for Vibrio sp. JCM 18905 are not detailed, members of the Vibrio genus are typically associated with aquatic ecosystems and can play roles as pathogens, symbionts, or essential components of marine microbiomes. The presence of a single replicon may suggest a potential for rapid adaptation to environmental changes, as the simplicity of its genomic architecture can facilitate quicker evolutionary responses. This trait could be advantageous in fluctuating marine environments, where competition and resource availability can change rapidly. In summary, Vibrio sp. JCM 18905, with its single replicon and designated genomic reference, exemplifies characteristics that may contribute to its ecological versatility in marine ecosystems. Understanding these traits can provide insights into how Vibrio species adapt and thrive in diverse aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18905
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18905 DNA, contig: JCM18905.contig00064, whole

Gene Summary

Adenine Count

1407233 bp

Thymine Count

1435234 bp

Guanine Count

1189180 bp

Cytosine Count

1124897 bp

Genome Length

5156544 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap-type c4-dicarboxylate transport system, periplasmic componentJCM18905_3286Not AvailablePositive3440823 - 344182137110.1
trap-type transport system, small permease component, predicted n-acetylneuraminate transporterJCM18905_3287Not AvailablePositive3441894 - 344256825487.0
trap-type c4-dicarboxylate transport system, large permease componentJCM18905_3288Not AvailablePositive3442572 - 344367948676.8
two component, sigma-54 specific, central transcriptional regulator of acidic amino acid uptakeJCM18905_3289Not AvailableNegative3444243 - 344558049649.8
signal transduction histidine kinase regulating c4-dicarboxylate transport systemJCM18905_3290Not AvailableNegative3445585 - 344739368073.8
cell division trigger factorJCM18905_3291Not AvailablePositive3447922 - 344922948437.7
atp-dependent clp protease proteolytic subunitJCM18905_3292Not AvailablePositive3449335 - 344996123042.8
atp-dependent clp protease atp-binding subunit clpxJCM18905_3293Not AvailablePositive3450032 - 345131246667.8
atp-dependent protease la type iJCM18905_3294Not AvailablePositive3451444 - 345379687995.7
dna-binding protein hu-betaJCM18905_3295Not AvailablePositive3453987 - 34542599408.16

Displaying genes 3191 – 3200 of 4816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.