Vibrio sp. JCM 18905

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18905 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for its adaptability and efficiency in replication and gene expression. The organism is cataloged under the accession number BAYS00000000.1, which serves as a reference for genomic studies and comparisons within the Vibrio genus. Vibrio species are known for their diverse ecological roles, often found in marine environments. While specific ecological interactions for Vibrio sp. JCM 18905 are not detailed, members of the Vibrio genus are typically associated with aquatic ecosystems and can play roles as pathogens, symbionts, or essential components of marine microbiomes. The presence of a single replicon may suggest a potential for rapid adaptation to environmental changes, as the simplicity of its genomic architecture can facilitate quicker evolutionary responses. This trait could be advantageous in fluctuating marine environments, where competition and resource availability can change rapidly. In summary, Vibrio sp. JCM 18905, with its single replicon and designated genomic reference, exemplifies characteristics that may contribute to its ecological versatility in marine ecosystems. Understanding these traits can provide insights into how Vibrio species adapt and thrive in diverse aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18905
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18905 DNA, contig: JCM18905.contig00064, whole

Gene Summary

Adenine Count

1407233 bp

Thymine Count

1435234 bp

Guanine Count

1189180 bp

Cytosine Count

1124897 bp

Genome Length

5156544 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cold shock protein cspdJCM18905_2885Not AvailableNegative3030499 - 30307177861.21
atp-dependent clp protease adaptor protein clpsJCM18905_2886Not AvailablePositive3031553 - 30317567710.31
atp-dependent clp protease atp-binding subunit clpaJCM18905_2887Not AvailablePositive3031807 - 303407683409.8
translation initiation factor 1JCM18905_2888Not AvailableNegative3034211 - 30344298223.14
arginine-trna-protein transferaseJCM18905_2889Not AvailableNegative3034511 - 303521227567.9
leucyl/phenylalanyl-trna-protein transferaseJCM18905_2890Not AvailableNegative3035209 - 303592527067.4
outer membrane lipoproteinJCM18905_2891Not AvailablePositive3035965 - 303644117563.2
5-enolpyruvylshikimate-3-phosphate synthaseJCM18905_2892Not AvailablePositive3036730 - 303801446399.6
ycin proteinJCM18905_2893Not AvailableNegative3038080 - 30383289520.34
dna topoisomerase iJCM18905_2895Not AvailablePositive3038767 - 304140297980.8

Displaying genes 2811 – 2820 of 4816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.