Vibrio sp. JCM 18905

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18905 is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait can be significant for its adaptability and efficiency in replication and gene expression. The organism is cataloged under the accession number BAYS00000000.1, which serves as a reference for genomic studies and comparisons within the Vibrio genus. Vibrio species are known for their diverse ecological roles, often found in marine environments. While specific ecological interactions for Vibrio sp. JCM 18905 are not detailed, members of the Vibrio genus are typically associated with aquatic ecosystems and can play roles as pathogens, symbionts, or essential components of marine microbiomes. The presence of a single replicon may suggest a potential for rapid adaptation to environmental changes, as the simplicity of its genomic architecture can facilitate quicker evolutionary responses. This trait could be advantageous in fluctuating marine environments, where competition and resource availability can change rapidly. In summary, Vibrio sp. JCM 18905, with its single replicon and designated genomic reference, exemplifies characteristics that may contribute to its ecological versatility in marine ecosystems. Understanding these traits can provide insights into how Vibrio species adapt and thrive in diverse aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18905
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18905
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18905 DNA, contig: JCM18905.contig00064, whole

Gene Summary

Adenine Count

1407233 bp

Thymine Count

1435234 bp

Guanine Count

1189180 bp

Cytosine Count

1124897 bp

Genome Length

5156544 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetolactate synthase, catabolicJCM18905_2113Not AvailablePositive2223277 - 222498961920.5
3-oxoacyl-[acyl-carrier protein] reductaseJCM18905_2114Not AvailablePositive2224986 - 222574726452.5
choline-glycine betaine transporterJCM18905_2115Not AvailableNegative2225838 - 222623865124.4
sam-dependent methyltransferaseJCM18905_2116Not AvailableNegative2227899 - 222850623139.7
phenylacetate-coenzyme a ligaseJCM18905_2117Not AvailableNegative2228634 - 222983943732.8
branched-chain amino acid transport atp-binding protein livfJCM18905_2118Not AvailableNegative2229849 - 223067130508.0
branched-chain amino acid abc transporter, amino acid-binding proteinJCM18905_2119Not AvailableNegative2230752 - 223200245539.5
branched-chain amino acid transport system permease protein livmJCM18905_2120Not AvailableNegative2232048 - 223312139233.4
high-affinity branched-chain amino acid transport system permease protein livhJCM18905_2121Not AvailableNegative2233133 - 223402632344.0
long-chain-fatty-acid-coa ligaseJCM18905_2122Not AvailableNegative2234026 - 223540773293.4

Displaying genes 2091 – 2100 of 4816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.