Vibrio sp. JCM 18904

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18904 is a distinct microbial species characterized by possessing a single replicon. This trait indicates a simplified genomic structure compared to other bacteria that may have multiple replicons. The genome of Vibrio sp. JCM 18904 is accessible under the accession number BAYR00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. Vibrio species are known for their ecological roles, particularly in aquatic environments. They are often associated with marine and estuarine ecosystems, where they play a crucial role in nutrient cycling and the decomposition of organic matter. The presence of Vibrio sp. JCM 18904 in these habitats could suggest its involvement in similar ecological functions, contributing to the overall health and balance of marine ecosystems. Understanding the specific traits and genetic composition of Vibrio sp. JCM 18904 can offer insights into its adaptability and resilience in varying environmental conditions. The single replicon may confer advantages in terms of genetic stability and efficient replication, allowing the organism to thrive in competitive environments. This adaptability is essential for survival in fluctuating habitats typically encountered by Vibrio species, emphasizing the importance of studying bacteria like Vibrio sp. JCM 18904 to comprehend their ecological significance and potential impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18904
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18904
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18904 DNA, contig: JCM18904.contig00070, whole

Gene Summary

Adenine Count

1457645 bp

Thymine Count

1462779 bp

Guanine Count

1205155 bp

Cytosine Count

1144606 bp

Genome Length

5270185 bp

Protein-coding Genes

4874 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putrescine transport atp-binding protein potaJCM18904_895Not AvailableNegative890593 - 89161738351.2
spermidine putrescine abc transporter permease component potcJCM18904_896Not AvailableNegative891614 - 89240429496.8
abc transporter permease proteinJCM18904_897Not AvailableNegative892407 - 89281632546.9
hypothetical proteinJCM18904_898Not AvailableNegative893299 - 89412631470.3
ferric iron abc transporter, iron-binding proteinJCM18904_899Not AvailableNegative894139 - 89521239220.9
2-aminoethylphosphonate uptake and metabolism regulatorJCM18904_900Not AvailablePositive895423 - 89615727920.8
high-affinity choline uptake protein bettJCM18904_901Not AvailableNegative896220 - 89677256589.0
beta-mannosidaseJCM18904_902Not AvailablePositive898118 - 90053793250.9
hypothetical proteinJCM18904_904Not AvailablePositive901063 - 90142213427.1
abc transporter, periplasmic spermidine putrescine-binding protein potdJCM18904_905Not AvailablePositive901598 - 90259437358.1

Displaying genes 921 – 930 of 5003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.