Vibrio sp. JCM 18904

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18904 is a distinct microbial species characterized by possessing a single replicon. This trait indicates a simplified genomic structure compared to other bacteria that may have multiple replicons. The genome of Vibrio sp. JCM 18904 is accessible under the accession number BAYR00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. Vibrio species are known for their ecological roles, particularly in aquatic environments. They are often associated with marine and estuarine ecosystems, where they play a crucial role in nutrient cycling and the decomposition of organic matter. The presence of Vibrio sp. JCM 18904 in these habitats could suggest its involvement in similar ecological functions, contributing to the overall health and balance of marine ecosystems. Understanding the specific traits and genetic composition of Vibrio sp. JCM 18904 can offer insights into its adaptability and resilience in varying environmental conditions. The single replicon may confer advantages in terms of genetic stability and efficient replication, allowing the organism to thrive in competitive environments. This adaptability is essential for survival in fluctuating habitats typically encountered by Vibrio species, emphasizing the importance of studying bacteria like Vibrio sp. JCM 18904 to comprehend their ecological significance and potential impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18904
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18904
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18904 DNA, contig: JCM18904.contig00070, whole

Gene Summary

Adenine Count

1457645 bp

Thymine Count

1462779 bp

Guanine Count

1205155 bp

Cytosine Count

1144606 bp

Genome Length

5270185 bp

Protein-coding Genes

4874 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
guanosine-5'-triphosphate,3'-diphosphate pyrophosphataseJCM18904_4999Not AvailableNegative5019739 - 502117252895.8
atp-dependent rna helicase rhlbJCM18904_5000Not AvailableNegative5021256 - 502257949435.0
thioredoxinJCM18904_5001Not AvailablePositive5022691 - 502301711702.1
transcription termination factor rhoJCM18904_5002Not AvailablePositive5023214 - 502447646877.8
hypothetical proteinJCM18904_5003Not AvailablePositive5024582 - 502557837611.5
3-polyprenyl-4-hydroxybenzoate carboxy-lyaseJCM18904_5004Not AvailablePositive5025670 - 502752569854.8
ferredoxinJCM18904_5005Not AvailablePositive5027522 - 502779410246.4
nad(p)h-flavin reductaseJCM18904_5006Not AvailablePositive5027809 - 502852526517.4
flagellin protein fladJCM18904_5008Not AvailablePositive5028860 - 502929715212.8
flagellin protein flaaJCM18904_5009Not AvailablePositive5029586 - 503071639872.2

Displaying genes 4751 – 4760 of 5003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.