Vibrio sp. JCM 18904

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18904 is a distinct microbial species characterized by possessing a single replicon. This trait indicates a simplified genomic structure compared to other bacteria that may have multiple replicons. The genome of Vibrio sp. JCM 18904 is accessible under the accession number BAYR00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. Vibrio species are known for their ecological roles, particularly in aquatic environments. They are often associated with marine and estuarine ecosystems, where they play a crucial role in nutrient cycling and the decomposition of organic matter. The presence of Vibrio sp. JCM 18904 in these habitats could suggest its involvement in similar ecological functions, contributing to the overall health and balance of marine ecosystems. Understanding the specific traits and genetic composition of Vibrio sp. JCM 18904 can offer insights into its adaptability and resilience in varying environmental conditions. The single replicon may confer advantages in terms of genetic stability and efficient replication, allowing the organism to thrive in competitive environments. This adaptability is essential for survival in fluctuating habitats typically encountered by Vibrio species, emphasizing the importance of studying bacteria like Vibrio sp. JCM 18904 to comprehend their ecological significance and potential impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18904
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18904
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18904 DNA, contig: JCM18904.contig00070, whole

Gene Summary

Adenine Count

1457645 bp

Thymine Count

1462779 bp

Guanine Count

1205155 bp

Cytosine Count

1144606 bp

Genome Length

5270185 bp

Protein-coding Genes

4874 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Orf56JCM18904_4206Not AvailableNegative4289076 - 429040750381.3
Issod3, transposaseJCM18904_4227Not AvailableNegative4305640 - 43058528118.12
PmgcJCM18904_4228Not AvailablePositive4306531 - 430709421036.7
Major tail tube protein tubbJCM18904_4229Not AvailablePositive4307106 - 430762119450.2
Putative morphogenetic proteinJCM18904_4230Not AvailablePositive4307621 - 430843631356.1
Transglycosylase slt domain proteinJCM18904_4231Not AvailablePositive4308564 - 431058571818.8
hypothetical proteinJCM18904_4232Not AvailablePositive4310549 - 431128326458.6
PmgaJCM18904_4233Not AvailablePositive4311287 - 431163712624.1
Baseplate structural protein bplaJCM18904_4234Not AvailablePositive4311634 - 43118618373.12
Baseplate structural protein bplaJCM18904_4235Not AvailablePositive4311897 - 431264928464.7

Displaying genes 31 – 40 of 5003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.