Vibrio sp. JCM 18904

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 18904 is a distinct microbial species characterized by possessing a single replicon. This trait indicates a simplified genomic structure compared to other bacteria that may have multiple replicons. The genome of Vibrio sp. JCM 18904 is accessible under the accession number BAYR00000000.1, which provides a reference point for researchers interested in its genetic makeup and potential applications. Vibrio species are known for their ecological roles, particularly in aquatic environments. They are often associated with marine and estuarine ecosystems, where they play a crucial role in nutrient cycling and the decomposition of organic matter. The presence of Vibrio sp. JCM 18904 in these habitats could suggest its involvement in similar ecological functions, contributing to the overall health and balance of marine ecosystems. Understanding the specific traits and genetic composition of Vibrio sp. JCM 18904 can offer insights into its adaptability and resilience in varying environmental conditions. The single replicon may confer advantages in terms of genetic stability and efficient replication, allowing the organism to thrive in competitive environments. This adaptability is essential for survival in fluctuating habitats typically encountered by Vibrio species, emphasizing the importance of studying bacteria like Vibrio sp. JCM 18904 to comprehend their ecological significance and potential impacts on marine biodiversity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 18904
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 18904
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 18904 DNA, contig: JCM18904.contig00070, whole

Gene Summary

Adenine Count

1457645 bp

Thymine Count

1462779 bp

Guanine Count

1205155 bp

Cytosine Count

1144606 bp

Genome Length

5270185 bp

Protein-coding Genes

4874 genes

Non-Coding Genes

129 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinJCM18904_142Not AvailableNegative153806 - 15465731548.9
diguanylate cyclase/phosphodiesteraseJCM18904_143Not AvailableNegative155042 - 15638151438.8
hypothetical proteinJCM18904_144Not AvailableNegative156383 - 15738037772.9
diguanylate cyclase/phosphodiesterase domain 2JCM18904_145Not AvailableNegative157602 - 15856936634.6
regulator of nucleoside diphosphate kinaseJCM18904_147Not AvailableNegative158800 - 15920715012.0
nitrite reductaseJCM18904_148Not AvailablePositive159733 - 16229793672.1
nitrite reductaseJCM18904_149Not AvailablePositive162310 - 16263311843.2
nitrite transporter from formate/nitrite familyJCM18904_150Not AvailablePositive162835 - 16313430132.8
uroporphyrinogen-iii methyltransferaseJCM18904_151Not AvailablePositive163862 - 16462027378.9
hypothetical proteinJCM18904_152Not AvailableNegative164637 - 16508017042.7

Displaying genes 231 – 240 of 5003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.