Zhouia amylolytica AD3

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Zhouia

Description

Zhouia amylolytica AD3 is characterized by its single replicon, indicating a streamlined genomic structure that may contribute to its specific metabolic capabilities. The organism has been cataloged under the accession number AYXY00000000.1, which provides a reference point for genetic and genomic studies. The designation of "amylolytica" in its name suggests a potential specialization in the degradation of starch or other amylopectin-like substances, although specific enzymatic pathways or mechanisms have not been detailed in the provided evidence. This trait could imply ecological roles in environments where starch-rich substrates are prevalent, such as decomposing plant materials or in agricultural settings where starchy residues are abundant. Understanding the genomic configuration of Zhouia amylolytica AD3 may offer insights into its adaptability and survival strategies in various ecological niches. The presence of a single replicon could be advantageous for rapid replication and efficient management of genetic resources, particularly in fluctuating environments where quick responses to available substrates are crucial. Overall, Zhouia amylolytica AD3 exemplifies a microbe that may play a significant role in the degradation of complex carbohydrates, contributing to nutrient cycling and energy flow in its ecosystem. Further research could elucidate its metabolic pathways and ecological interactions, enhancing our understanding of microbial contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusZhouia
SpeciesZhouia amylolytica
StrainAD3

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Zhouia amylolytica AD3 51.P278.1_32, whole genome shotgun

Gene Summary

Adenine Count

1194549 bp

Thymine Count

1204632 bp

Guanine Count

696548 bp

Cytosine Count

697220 bp

Genome Length

3792949 bp

Protein-coding Genes

3362 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa dehydrogenaseP278_00190Not AvailableNegative26079 - 2722141777.0
glu/leu/phe/val dehydrogenase family proteinP278_00200Not AvailablePositive27492 - 2871844950.8
citrate transporterP278_00210Not AvailablePositive28736 - 3013050766.6
biopolymer transport proteinP278_00220Not AvailablePositive30173 - 3086224503.3
biopolymer transport proteinP278_00230Not AvailablePositive30915 - 3125012530.3
hypothetical proteinP278_00240Not AvailablePositive31307 - 3207427367.2
folylpolyglutamate synthase/dihydrofolate synthaseP278_00250Not AvailablePositive32127 - 3329342815.8
Trna-valNot AvailableNot AvailablePositive33363 - 33440Not Available
Trna-valNot AvailableNot AvailablePositive33463 - 33540Not Available
hypothetical proteinP278_00260Not AvailablePositive33695 - 3478042149.2

Displaying genes 31 – 40 of 3414 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

72 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da

Displaying 1–10 of 72 metabolites

Health Effects

No health effects information available for this bacterium.