Corynebacterium casei LMG S-19264

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Corynebacteriaceae

Genus

Corynebacterium

Description

Corynebacterium casei LMG S-19264 is characterized by having three distinct replicons. This trait is significant as it may contribute to the bacterium's genetic diversity and adaptability. The strain is documented in several accessions, specifically NZ_CP004352.1, NZ_CP004351.1, and NZ_CP004350.1. These accessions provide a reference for genomic studies and facilitate further research into the genetic makeup and potential applications of C. casei. Corynebacterium species, including C. casei, are known for their role in various ecological niches and their potential use in biotechnology, particularly in fermentation processes and probiotic applications. The presence of multiple replicons may suggest a complex genetic architecture that could influence metabolic functions and stress responses, further emphasizing the ecological versatility of this microorganism. The understanding of C. casei's genetic structure through these accessions can pave the way for exploring its practical applications in health and industry.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesCorynebacterium casei
StrainLMG S-19264

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Corynebacterium casei LMG S-19264
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcheese
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Corynebacterium casei LMG S-19264 plasmid pCASE2, complete

Gene Summary

Adenine Count

3504 bp

Thymine Count

3802 bp

Guanine Count

4267 bp

Cytosine Count

4691 bp

Genome Length

16264 bp

Protein-coding Genes

15 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uridine diphosphate-n-acetylglucosamine-binding protein yvckCCASEI_RS07485Not AvailableNegative1625640 - 162664735570.7
rnase adapter rapzCCASEI_RS07490Not AvailableNegative1626853 - 162773732735.0
excinuclease abc subunit uvrcCCASEI_RS07495Not AvailableNegative1627818 - 162986977516.3
ph domain-containing proteinCCASEI_RS07500Not AvailableNegative1629962 - 163055822241.2
6,7-dimethyl-8-ribityllumazine synthaseCCASEI_RS07505Not AvailableNegative1630574 - 163106517044.3
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiCCASEI_RS07510Not AvailableNegative1631098 - 163236946452.9
riboflavin synthaseCCASEI_RS07515Not AvailableNegative1632381 - 163299522004.3
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdCCASEI_RS07520Not AvailableNegative1633043 - 163408936409.6
ribulose-phosphate 3-epimeraseCCASEI_RS07525Not AvailableNegative1634110 - 163479024667.3
rsmb/nop family class i sam-dependent rna methyltransferaseCCASEI_RS07530Not AvailableNegative1634801 - 163643258799.3

Displaying genes 1521 – 1530 of 2884 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

26 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 26 metabolites

Health Effects

No health effects information available for this bacterium.