Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
secondary thiamine-phosphate synthase enzymeSCALIN_C05_0041Not AvailablePositive1060982 - 106136514233.0
4-hydroxybenzoate polyprenyltransferase and related prenyltransferaseSCALIN_C05_0042Not AvailablePositive1061427 - 106186415723.0
zn-dependent hydrolase, including glyoxylasesSCALIN_C05_0043Not AvailableNegative1061798 - 106219615365.7
aminopeptidaseSCALIN_C05_0044Not AvailableNegative1062941 - 10631357349.23
hypothetical proteinSCALIN_C05_0045Not AvailableNegative1063136 - 106340210250.3
recg-like helicaseSCALIN_C05_0046Not AvailableNegative1063501 - 106558279315.5
aspartyl-trna synthaseSCALIN_C05_0047Not AvailableNegative1065788 - 106756066961.7
histidyl-trna synthaseSCALIN_C05_0048Not AvailableNegative1067561 - 106891351353.1
exporter of the rnd superfamilySCALIN_C05_0049Not AvailablePositive1069042 - 10692518226.36
oligopeptide transporterSCALIN_C05_0050Not AvailablePositive1069244 - 10694778432.2

Displaying genes 891 – 900 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.