Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxylamine oxidoreductaseSCALIN_C34_0102Not AvailableNegative4141695 - 414352169327.2
intracellular protease/amidaseSCALIN_C34_0103Not AvailableNegative4143626 - 414414720195.8
abc-type proline/glycine betaine transport systems, periplasmic componentsSCALIN_C34_0104Not AvailablePositive4144767 - 414532121567.8
dna-(apurinic or apyrimidinic site) lyase / pyrimidine dimer dna glycosylaseSCALIN_C34_0105Not AvailableNegative4145500 - 414592816761.4
sirohydrochlorin cobaltochelataseSCALIN_C34_0106Not AvailableNegative4146005 - 414637913703.7
methyl-accepting chemotaxis sensory transducerSCALIN_C34_0107Not AvailableNegative4146699 - 414730422550.5
deoxyribodipyrimidine photolyaseSCALIN_C34_0108Not AvailablePositive4147611 - 414828826391.4
dtdp-4-dehydrorhamnose 3,5-epimerase and related enzymesSCALIN_C34_0109Not AvailableNegative4148393 - 415000061530.1
deoxyribodipyrimidine photolyaseSCALIN_C34_0110Not AvailablePositive4150468 - 415076711787.3
protein kinaseSCALIN_C34_0111Not AvailableNegative4150871 - 415219350947.2

Displaying genes 3521 – 3530 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.