Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycogen synthaseSCALIN_C13_0045Not AvailablePositive1830691 - 183214855603.1
hypothetical proteinSCALIN_C13_0046Not AvailableNegative1832471 - 183352039541.5
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterasesSCALIN_C13_0047Not AvailableNegative1833583 - 183500752889.8
dihydrodipicolinate synthase/n-acetylneuraminate lyaseSCALIN_C13_0048Not AvailableNegative1835024 - 183599835882.0
uncharacterized proteinSCALIN_C13_0049Not AvailablePositive1836350 - 183748341185.1
phospho-2-dehydro-3-deoxyheptonate aldolaseSCALIN_C13_0050Not AvailablePositive1837486 - 183849936432.5
flavin-nucleotide-binding proteinSCALIN_C13_0051Not AvailablePositive1838529 - 183913422982.6
ll-diaminopimelate aminotransferaseSCALIN_C13_0052Not AvailablePositive1839570 - 184079644916.3
tryptophanyl-trna synthaseSCALIN_C13_0053Not AvailablePositive1840980 - 184195736926.5
hypothetical proteinSCALIN_C13_0054Not AvailableNegative1841964 - 184358361225.3

Displaying genes 1471 – 1480 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.