Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl transferase family proteinSCALIN_C10_0125Not AvailableNegative1623863 - 162466930168.7
glycosyl transferase, group 2 familySCALIN_C10_0126Not AvailableNegative1625022 - 162589134246.1
hypothetical proteinSCALIN_C10_0127Not AvailableNegative1625980 - 162742855621.7
asparagine synthetaseSCALIN_C10_0128Not AvailableNegative1627926 - 162987875167.3
glycosyl transferase, family 2SCALIN_C10_0129Not AvailableNegative1629987 - 163173866568.4
transcriptional regulatorSCALIN_C10_0130Not AvailableNegative1632330 - 16324795627.93
hypothetical proteinSCALIN_C10_0131Not AvailablePositive1632644 - 163326122308.7
rubrerythrinSCALIN_C10_0132Not AvailableNegative1633454 - 163403221823.6
histidine kinaseSCALIN_C10_0133Not AvailableNegative1634215 - 163507533238.9
transposase is204/is1001/is1096/is1165 family proteinSCALIN_C10_0134Not AvailablePositive1635478 - 163613125458.2

Displaying genes 1301 – 1310 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.