Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-lactamase class c and other penicillin binding proteinsSCALIN_C10_0075Not AvailableNegative1559788 - 156059130490.3
hypothetical proteinSCALIN_C10_0076Not AvailableNegative1560592 - 156125724517.6
anti-sigma factorSCALIN_C10_0077Not AvailableNegative1561254 - 156210532752.1
dna-directed rna polymerase specialized sigma subunitSCALIN_C10_0078Not AvailableNegative1562105 - 156271023774.1
pyruvate flavodoxin/ferredoxin oxidoreductaseSCALIN_C10_0079Not AvailablePositive1563142 - 1566729130546.0
peptide chain release factor rf-3SCALIN_C10_0080Not AvailablePositive1567625 - 156830524158.7
hypothetical proteinSCALIN_C10_0081Not AvailablePositive1569143 - 156967620996.5
rna-binding proteinSCALIN_C10_0082Not AvailablePositive1569731 - 15698926170.53
heme proteinSCALIN_C10_0083Not AvailablePositive1570909 - 157143319294.3
rubrerythrinSCALIN_C10_0084Not AvailablePositive1571578 - 157206917961.1

Displaying genes 1251 – 1260 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.