Candidatus Scalindua japonica

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Candidatus Brocadiia

Order

Candidatus Brocadiales

Family

Candidatus Scalinduaceae

Genus

Candidatus Scalindua

Description

Candidatus Scalindua japonica is a notable member of the microbial community, distinguished by its unique genetic makeup and ecological role. This organism is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in specific environments. The accession number for its genomic data is BAOS00000000.1, which serves as a reference point for further studies and analyses concerning its genetic characteristics. As a member of the broader group of anaerobic ammonium-oxidizing (anammox) bacteria, Candidatus Scalindua japonica plays a critical role in the nitrogen cycle, particularly in the conversion of ammonium and nitrite into nitrogen gas. This process is essential for maintaining the balance of nitrogen in aquatic ecosystems, as it helps to mitigate excess nutrients and prevent issues such as eutrophication. The presence of Candidatus Scalindua japonica in various environments underscores its ecological significance, especially in marine and freshwater systems where nitrogen levels can become elevated. By efficiently participating in nitrogen removal processes, this bacterium contributes to the overall health and stability of its ecosystem. Understanding the specific traits and functions of Candidatus Scalindua japonica can provide valuable insights into microbial ecology and the broader implications of nitrogen cycling in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassCandidatus Brocadiia
OrderCandidatus Brocadiales
FamilyCandidatus Scalinduaceae
GenusCandidatus Scalindua
SpeciesCandidatus Scalindua japonica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Scalindua japonica husup-a2 DNA, contig: scal_C47,

Gene Summary

Adenine Count

1473246 bp

Thymine Count

1470198 bp

Guanine Count

943112 bp

Cytosine Count

926297 bp

Genome Length

4812853 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSCALIN_C10_0015Not AvailableNegative1488298 - 148908630750.6
gcn5-related n-acetyltransferaseSCALIN_C10_0016Not AvailableNegative1489150 - 148979124609.4
n-acetylmuramoyl-l-alanine amidaseSCALIN_C10_0017Not AvailablePositive1490719 - 149133923766.0
acetyltransferaseSCALIN_C10_0018Not AvailablePositive1492747 - 149326519691.5
polysaccharide deacetylaseSCALIN_C10_0019Not AvailableNegative1493666 - 149456533900.9
nad-dependent epimerase/dehydrataseSCALIN_C10_0020Not AvailableNegative1494556 - 149559939458.8
methionyl-trna formyltransferaseSCALIN_C10_0021Not AvailableNegative1495615 - 149655635710.5
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseSCALIN_C10_0022Not AvailableNegative1496534 - 149749336348.6
degt/dnrj/eryc1/strs aminotransferaseSCALIN_C10_0023Not AvailableNegative1497508 - 149867443545.5
acetylglutamate semialdehyde dehydrogenaseSCALIN_C10_0024Not AvailableNegative1498678 - 149895910786.2

Displaying genes 1191 – 1200 of 4067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.