Vibrio bivalvicida str. 605

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio bivalvicida str. 605 is characterized by having a single replicon, indicating a streamlined genomic structure. The genome of this strain is accessible under the accession number LLEI00000000.2, which provides a reference point for researchers exploring its genetic composition and potential applications. Vibrio bivalvicida is a species within the Vibrio genus, which is known for its ecological versatility and association with marine environments. Species in this genus often play significant roles in aquatic ecosystems, including interactions with shellfish, which may be particularly relevant for V. bivalvicida given its name. The presence of a single replicon suggests a potential efficiency in its metabolic processes, which could be advantageous in its natural habitat. Understanding the specific traits and genomic features of V. bivalvicida str. 605 can have implications for aquaculture, particularly concerning its interactions with bivalves. This strain may provide insights into host-pathogen dynamics, especially in marine environments where it could impact bivalve health. The study of its genomic data could also assist in developing strategies for managing Vibrio-related diseases in shellfish, highlighting the importance of this organism in both ecological and economic contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio bivalvicida
Strain605

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio bivalvicida str. 605
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio bivalvicida strain 605 contig_91, whole genome shotgun

Gene Summary

Adenine Count

1364302 bp

Thymine Count

1377155 bp

Guanine Count

1092615 bp

Cytosine Count

1087697 bp

Genome Length

4922047 bp

Protein-coding Genes

2495 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alanine--trna ligaseAPB76_09890Not AvailableNegative75302 - 7788494151.5
recombinase recxAPB76_09895Not AvailableNegative78027 - 7849118228.3
dna recombination/repair protein recaAPB76_09900Not AvailableNegative78565 - 7961137438.2
damage-inducible protein cinaAPB76_09905Not AvailableNegative79803 - 8029717201.5
dna mismatch repair protein mutsAPB76_09910Not AvailablePositive80425 - 8296294075.7
lps export abc transporter permease lptgAPB76_09915Not AvailableNegative83037 - 8410739447.9
lps export abc transporter permease lptfAPB76_09920Not AvailableNegative84111 - 8521440788.4
leucyl aminopeptidaseAPB76_09925Not AvailablePositive85406 - 8691454650.8
dna polymerase iii subunit chiAPB76_09930Not AvailablePositive86995 - 8744417033.1
valine--trna ligaseAPB76_09935Not AvailablePositive87544 - 90417108866.0

Displaying genes 71 – 80 of 2495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.