Rhodopirellula europaea 6C

ovoid

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Pirellulales

Family

Pirellulaceae

Genus

Rhodopirellula

Description

Rhodopirellula europaea 6C is a Gram-negative, ovoid-shaped bacterium. This organism is notable for having a single replicon, which suggests a streamlined genetic organization. The available accession number for this strain is ANMO00000000.1, indicating that it is documented within a biological database for reference. As a member of the Rhodopirellula genus, R. europaea 6C likely shares characteristics with other members of this group, which are typically found in marine environments. The Gram-negative classification implies that it possesses a thinner peptidoglycan layer and an outer membrane, which may influence its interactions with other microorganisms and its resilience to certain environmental stresses. The ecological role of R. europaea 6C could be significant in its native habitat, contributing to biogeochemical cycling and potentially interacting with other microbial communities. The specific traits of this bacterium, including its ovoid shape and single replicon, may affect its metabolic processes and ecological niche. Understanding these traits can provide insights into the adaptability and survival strategies of bacteria in marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPirellulales
FamilyPirellulaceae
GenusRhodopirellula
SpeciesRhodopirellula europaea
Strain6C

Profile

Physiology
Gram staining propertiesGram-negative
Shapeovoid
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodopirellula europaea 6C c6C0273, whole genome shotgun sequence.

Gene Summary

Adenine Count

1584733 bp

Thymine Count

1598563 bp

Guanine Count

2010081 bp

Cytosine Count

1997927 bp

Genome Length

7191307 bp

Protein-coding Genes

6188 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent dna helicase recqRE6C_01684Not AvailablePositive1927460 - 192895356380.2
dihydropteroate synthaseRE6C_01685Not AvailableNegative1928930 - 192985033103.6
oxygen-independent coproporphyrinogen iii oxidaseRE6C_01686Not AvailableNegative1929847 - 193119351151.5
serine/threonine protein kinase related proteinRE6C_01687Not AvailableNegative1931302 - 193266348752.3
protein containing quinate/shikimate 5-dehydrogenaseRE6C_01688Not AvailablePositive1932792 - 193428255406.7
alanine racemase domain proteinRE6C_01689Not AvailableNegative1934331 - 193543740490.6
2-alkenal reductaseRE6C_01690Not AvailableNegative1935484 - 193666841949.6
rna polymerase, sigma 54/sigma 60 factorRE6C_01691Not AvailableNegative1936668 - 193824860307.1
recombination protein recrRE6C_01692Not AvailableNegative1938268 - 193886721845.2
protein belonging to uncharacterized protein family upf0133RE6C_01693Not AvailableNegative1938864 - 193925013194.8

Displaying genes 1721 – 1730 of 6255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

467 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 467 metabolites

Health Effects

No health effects information available for this bacterium.