Phocaeicola coprocola CAG:162 str. MGS:162

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprocola CAG:162 str. MGS:162 is characterized as a Gram-negative, anaerobic bacterium with a rod shape. The presence of flagella indicates that this species may exhibit motility, which could play a role in its ecological interactions. This strain has a single replicon, suggesting a streamlined genomic organization that may facilitate efficient replication under anaerobic conditions. The accession number for this strain is CBCJ000000000.1, which provides a reference for genomic studies and further research. The anaerobic nature of Phocaeicola coprocola highlights its adaptation to environments devoid of oxygen, potentially influencing its ecological niche. Such bacteria are often involved in the degradation of organic matter, contributing to nutrient cycling in their environments. The flagella may enhance its ability to navigate through complex substrates, aiding in colonization and interaction with other microbial communities. Overall, the traits of Phocaeicola coprocola CAG:162 str. MGS:162 underline its specialization as an anaerobic rod-shaped bacterium, with implications for its ecological role in environments where oxygen is limited.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainCAG:162 MGS:162

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola CAG:162 str. MGS:162
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola CAG:162 str. MGS:162


Gene Summary

Adenine Count

926557 bp

Thymine Count

930438 bp

Guanine Count

639133 bp

Cytosine Count

642769 bp

Genome Length

3138897 bp

Protein-coding Genes

2478 genes

Non-Coding Genes

34 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized proteinBN509_00102Not AvailableNegative10868 - 1145522231.4
uncharacterized proteinBN509_00103Not AvailableNegative11492 - 1195616405.6
transporter mota/tolq/exbb proton channel family proteinBN509_00104Not AvailableNegative11967 - 1277028681.6
Trna-serNot AvailableNot AvailablePositive12845 - 12932Not Available
hydrolase tatd familyBN509_00105Not AvailableNegative13091 - 1387930053.0
polyprenyl synthetaseBN509_00106Not AvailableNegative13899 - 1488237477.2
tonb-dependent receptorBN509_00107Not AvailableNegative14983 - 1566925535.8
cytidylate kinaseBN509_00108Not AvailablePositive15843 - 1653525856.8
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseBN509_00109Not AvailablePositive16528 - 1739732924.5
6-phosphofructokinase 2BN509_00110Not AvailablePositive17482 - 1846235353.6

Displaying genes 11 – 20 of 2512 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0005442glycyl-L-asparagineC6H11N3O4Not availableNot available
Average189.171Da
Monoisotopic189.074955846Da
BASm0005445L-methionyl-L-alanineC8H16N2O3SChemical structure of L-methionyl-L-alanineNot available
Average220.29Da
Monoisotopic220.088163557Da
BASm0006316hydrogenobyrinateC45H60N4O14Chemical structure of hydrogenobyrinateNot available
Average880.989Da
Monoisotopic880.4106026Da
BASm0006317hydrogenobyrinate a,c-diamideC45H62N6O12Chemical structure of hydrogenobyrinate a,c-diamideNot available
Average879.021Da
Monoisotopic878.4425715Da
BASm0014067p-Aminobenzoic acidC7H7NO2Chemical structure of p-Aminobenzoic acid150-13-0
Average137.136Da
Monoisotopic137.047678473Da
BASm0014113N-alpha-Acetyl-L-citrullineC8H15N3O4Chemical structure of N-alpha-Acetyl-L-citrullineNULL
Average217.2224Da
Monoisotopic217.106255983Da
BASm0014310LysoPG(18:1(9Z)/0:0)C24H47O9PChemical structure of LysoPG(18:1(9Z)/0:0)NULL
Average510.605Da
Monoisotopic510.295770091Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.