Escherichia coli O145:H28 str. RM12581

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O145:H28 str. RM12581 is a Gram-negative bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This strain is a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. E. coli O145:H28 is predominantly found in host-associated habitats, indicating its association with living organisms. The optimal growth temperature for this strain is 37°C, placing it within the mesophilic temperature range suitable for human and animal hosts. E. coli O145:H28 possesses a complex genetic structure, with three replicons contributing to its genetic diversity and adaptability. The bacterium is surrounded by two membranes, typical of Gram-negative bacteria, which play a crucial role in its interaction with the environment and host. E. coli strains, including O145:H28, are known for their biotic relationships, as they can exist as free-living organisms or as part of the microbial flora in the intestines of various hosts. This versatility suggests that E. coli O145:H28 may contribute to various ecological functions, such as nutrient cycling and maintaining gut health in host organisms. Understanding the traits of E. coli O145:H28 can provide insights into its role in both health and disease, given that some E. coli strains are associated with pathogenicity. The specific genetic and physiological characteristics of this strain may influence its ecological niche and interactions within microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO145:H28 RM12581

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O145:H28 str. RM12581
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O145:H28 str. RM12581 plasmid pRM12581, complete

Gene Summary

Adenine Count

14256 bp

Thymine Count

16332 bp

Guanine Count

16410 bp

Cytosine Count

17564 bp

Genome Length

64562 bp

Protein-coding Genes

86 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein ygfxECRM12581_RS18740Not AvailableNegative3662898 - 366330516065.0
fad assembly factor sdheECRM12581_RS18745Not AvailableNegative3663286 - 366355210547.7
pp_03594ECRM12581_RS18750Not AvailablePositive3663795 - 3664775Not Available
paqr family membrane homeostasis protein trhaECRM12581_RS18755Not AvailableNegative3664852 - 366551123834.2
n(4)-acetylcytidine aminohydrolaseECRM12581_RS18760Not AvailableNegative3665675 - 366598611906.0
6-phospho-beta-glucosidase bglaECRM12581_RS18765Not AvailablePositive3666031 - 366746455091.3
aminomethyl-transferring glycine dehydrogenaseECRM12581_RS18770Not AvailableNegative3667628 - 3670501104337.0
glycine cleavage system protein gcvhECRM12581_RS18775Not AvailableNegative3670619 - 367100813839.9
glycine cleavage system aminomethyltransferase gcvtECRM12581_RS18780Not AvailableNegative3671032 - 367212640179.1
hypothetical proteinECRM12581_RS34510Not AvailablePositive3672417 - 36725003213.96

Displaying genes 4061 – 4070 of 5785 in total

Metabolites

54 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001429decanoateC10H19O2Chemical structure of decanoateNot available
Average171.2567Da
Monoisotopic171.138504852Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da

Displaying 1–10 of 54 metabolites

Health Effects

No health effects information available for this bacterium.