Dickeya solani RNS 08.23.3.1.A

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani RNS 08.23.3.1.A is a rod-shaped bacterium characterized by the presence of flagella, which suggests it is motile. This organism exhibits a single replicon, indicating it has a streamlined genetic structure that may facilitate efficient replication and adaptation. The accession number for this strain is NZ_CP016928.1, which allows for its identification and retrieval from genomic databases. As a member of the Dickeya genus, this bacterium is known for its role as a plant pathogen, particularly affecting crops such as potatoes. The flagellar motility may enhance its ability to colonize plant tissues and contribute to its pathogenicity. Understanding the specific traits of Dickeya solani RNS 08.23.3.1.A, including its morphology and genetic configuration, is crucial for developing control strategies in agricultural settings. Biologically, the presence of a single replicon may provide insights into the organism's evolutionary adaptations to its niche. The streamlined genome could reflect a specialization that allows for more rapid responses to environmental pressures, such as host plant defenses. Ecologically, the motility conferred by flagella may facilitate the spread of this pathogen within agricultural systems, making it an important subject for research aimed at understanding and managing plant diseases caused by Dickeya species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainRNS 08.23.3.1.A

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani RNS 08.23.3.1.A chromosome, complete genome.

Gene Summary

Adenine Count

1077463 bp

Thymine Count

1075902 bp

Guanine Count

1378061 bp

Cytosine Count

1391042 bp

Genome Length

4922468 bp

Protein-coding Genes

4143 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-acetyl-d-glu racemase dgcaD083_RS19255Not AvailableNegative4365845 - 436685536806.4
n-acetyltransferase dgcnD083_RS19260Not AvailableNegative4366866 - 436785835067.4
sensor domain-containing diguanylate cyclaseD083_RS19265Not AvailablePositive4368695 - 437025458337.5
iron uptake transporter permease efeuD083_RS19270Not AvailablePositive4370485 - 437133031062.5
iron uptake system protein efeoD083_RS19275Not AvailablePositive4371373 - 437249440932.9
iron uptake transporter deferrochelatase/peroxidase subunitD083_RS19280Not AvailablePositive4372506 - 437381947973.2
duf1272 domain-containing proteinD083_RS19285Not AvailablePositive4373870 - 43740978310.08
4'-phosphopantetheinyl transferaseD083_RS19290Not AvailableNegative4374225 - 437493826080.6
efflux rnd transporter periplasmic adaptor subunitD083_RS19295Not AvailableNegative4374935 - 437586433225.0
abc transporter atp-binding proteinD083_RS19300Not AvailableNegative4375861 - 437658025956.0

Displaying genes 3811 – 3820 of 4279 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.