Dickeya solani RNS 08.23.3.1.A

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani RNS 08.23.3.1.A is a rod-shaped bacterium characterized by the presence of flagella, which suggests it is motile. This organism exhibits a single replicon, indicating it has a streamlined genetic structure that may facilitate efficient replication and adaptation. The accession number for this strain is NZ_CP016928.1, which allows for its identification and retrieval from genomic databases. As a member of the Dickeya genus, this bacterium is known for its role as a plant pathogen, particularly affecting crops such as potatoes. The flagellar motility may enhance its ability to colonize plant tissues and contribute to its pathogenicity. Understanding the specific traits of Dickeya solani RNS 08.23.3.1.A, including its morphology and genetic configuration, is crucial for developing control strategies in agricultural settings. Biologically, the presence of a single replicon may provide insights into the organism's evolutionary adaptations to its niche. The streamlined genome could reflect a specialization that allows for more rapid responses to environmental pressures, such as host plant defenses. Ecologically, the motility conferred by flagella may facilitate the spread of this pathogen within agricultural systems, making it an important subject for research aimed at understanding and managing plant diseases caused by Dickeya species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainRNS 08.23.3.1.A

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani RNS 08.23.3.1.A chromosome, complete genome.

Gene Summary

Adenine Count

1077463 bp

Thymine Count

1075902 bp

Guanine Count

1378061 bp

Cytosine Count

1391042 bp

Genome Length

4922468 bp

Protein-coding Genes

4143 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrogen fixation negative regulator niflD083_RS09270Not AvailableNegative2135580 - 213710956137.5
flavodoxinD083_RS09275Not AvailablePositive2137565 - 213809518996.5
dna-3-methyladenine glycosylase 2 family proteinD083_RS09280Not AvailablePositive2138384 - 213974851520.3
methylated-dna--[protein]-cysteine s-methyltransferaseD083_RS22165Not AvailablePositive2139913 - 214046119559.2
nitrogen fixation protein nifmD083_RS09290Not AvailableNegative2140382 - 214119430523.7
nitrogen fixation protein nifzD083_RS09295Not AvailableNegative2141191 - 214163416450.6
nitrogenase-stabilizing/protective protein nifwD083_RS09300Not AvailableNegative2141618 - 214188710322.2
homocitrate synthaseD083_RS09305Not AvailableNegative2141892 - 214304041615.9
cysteine desulfurase nifsD083_RS09310Not AvailableNegative2143053 - 214429745252.6
fe-s cluster assembly protein nifuD083_RS09315Not AvailableNegative2144333 - 214516029663.3

Displaying genes 1841 – 1850 of 4279 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.