Dickeya solani RNS 08.23.3.1.A

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya solani RNS 08.23.3.1.A is a rod-shaped bacterium characterized by the presence of flagella, which suggests it is motile. This organism exhibits a single replicon, indicating it has a streamlined genetic structure that may facilitate efficient replication and adaptation. The accession number for this strain is NZ_CP016928.1, which allows for its identification and retrieval from genomic databases. As a member of the Dickeya genus, this bacterium is known for its role as a plant pathogen, particularly affecting crops such as potatoes. The flagellar motility may enhance its ability to colonize plant tissues and contribute to its pathogenicity. Understanding the specific traits of Dickeya solani RNS 08.23.3.1.A, including its morphology and genetic configuration, is crucial for developing control strategies in agricultural settings. Biologically, the presence of a single replicon may provide insights into the organism's evolutionary adaptations to its niche. The streamlined genome could reflect a specialization that allows for more rapid responses to environmental pressures, such as host plant defenses. Ecologically, the motility conferred by flagella may facilitate the spread of this pathogen within agricultural systems, making it an important subject for research aimed at understanding and managing plant diseases caused by Dickeya species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya solani
StrainRNS 08.23.3.1.A

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya solani RNS 08.23.3.1.A chromosome, complete genome.

Gene Summary

Adenine Count

1077463 bp

Thymine Count

1075902 bp

Guanine Count

1378061 bp

Cytosine Count

1391042 bp

Genome Length

4922468 bp

Protein-coding Genes

4143 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitD083_RS08770Not AvailableNegative2020840 - 202198841535.5
4-hydroxy-tetrahydrodipicolinate reductaseD083_RS08775Not AvailableNegative2022443 - 202326428832.6
ribonucleoside hydrolase rihcD083_RS08780Not AvailableNegative2023535 - 202445232644.5
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseD083_RS08785Not AvailableNegative2024525 - 202547534655.6
fkbp-type peptidyl-prolyl cis-trans isomeraseD083_RS08790Not AvailableNegative2025456 - 202592917020.2
signal peptidase iiD083_RS08795Not AvailableNegative2025933 - 202643918580.9
isoleucine--trna ligaseD083_RS08800Not AvailableNegative2026439 - 2029264104711.0
bifunctional riboflavin kinase/fad synthetaseD083_RS08805Not AvailableNegative2029299 - 203024034164.4
30s ribosomal protein s20D083_RS08810Not AvailablePositive2030635 - 20308989824.0
transcriptional activator nharD083_RS08815Not AvailableNegative2030976 - 203186633675.9

Displaying genes 1741 – 1750 of 4279 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.