Halopelagius longus str. BC12-B1

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halopelagius

Description

Halopelagius longus strain BC12-B1 is characterized by having a single replicon, indicating a streamlined genomic structure that may be advantageous for its adaptability and survival in specific environments. The genome of this strain is accessible through the accession number QQST00000000.1, which allows for further research and analysis of its genetic makeup. The single replicon trait suggests that Halopelagius longus BC12-B1 may exhibit a simpler regulatory network compared to organisms with multiple replicons, potentially impacting its metabolic capabilities and ecological interactions. This streamlined genomic architecture could be a response to the environmental pressures it encounters, allowing for efficient resource utilization and replication in its habitat. Understanding the genomic structure of Halopelagius longus BC12-B1 provides insights into its ecological role and evolutionary strategies. The presence of only one replicon may also imply a specialization in its ecological niche, enabling it to thrive in specific conditions. This could be particularly relevant in marine environments where competition and resource availability fluctuate. In summary, the single replicon of Halopelagius longus strain BC12-B1, along with its associated genomic information, contributes to our understanding of its biology and ecological dynamics. Further investigation into its genetic attributes may reveal more about its adaptations and interactions within its ecosystem.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalopelagius
SpeciesHalopelagius longus
StrainBC12-B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halopelagius longus strain BC12-B1 Scaffold8, whole genome shotgun

Gene Summary

Adenine Count

662969 bp

Thymine Count

665194 bp

Guanine Count

1272456 bp

Cytosine Count

1272085 bp

Genome Length

3878996 bp

Protein-coding Genes

3653 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophan--trna ligaseDWB78_16255Not AvailableNegative3227816 - 322899744358.6
type i 3-dehydroquinate dehydrataseDWB78_16260Not AvailableNegative3229604 - 32298499006.61
l-rhamnose mutarotaseDWB78_16265Not AvailablePositive3229935 - 323027913182.0
llm class flavin-dependent oxidoreductaseDWB78_16270Not AvailablePositive3230369 - 323136737456.9
alpha-l-fucosidaseDWB78_16275Not AvailablePositive3231485 - 323321864065.1
sugar abc transporter atp-binding proteinDWB78_16280Not AvailableNegative3233234 - 323403129020.1
abc transporter permeaseDWB78_16285Not AvailableNegative3234028 - 323503234566.3
sugar abc transporter substrate-binding proteinDWB78_16290Not AvailableNegative3235078 - 323627742938.4
amidohydrolaseDWB78_16295Not AvailableNegative3236374 - 323724033047.6
gfo/idh/moca family oxidoreductaseDWB78_16300Not AvailableNegative3237297 - 323839440120.7

Displaying genes 3191 – 3200 of 3704 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.