Bacteroides pyogenes JCM 10003

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides pyogenes JCM 10003 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella. This motility feature suggests that the organism has the capability to navigate its environment, which may be advantageous for colonization or accessing nutrients. The bacterium has a single replicon, indicating a streamlined genetic organization that can facilitate efficient replication and cellular processes. The genomic information for B. pyogenes JCM 10003 is cataloged under the accession number BAIU00000000.1, providing a resource for further research and exploration of its genetic makeup. In terms of its ecological role, Bacteroides species, including B. pyogenes, are commonly found in the gastrointestinal tracts of humans and animals, where they play a crucial role in the digestion of complex carbohydrates and the maintenance of gut health. Their presence contributes to the microbial diversity of the gut microbiome, which is essential for various physiological functions, including metabolic processes and the immune system's regulation. Understanding the traits and characteristics of Bacteroides pyogenes JCM 10003 can provide insights into its ecological significance and potential applications in biotechnology or medicine, particularly in relation to gut health and microbial interactions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides pyogenes
StrainJCM 10003

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides pyogenes JCM 10003
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides pyogenes JCM 10003 DNA, contig:contig_95, whole genome

Gene Summary

Adenine Count

896465 bp

Thymine Count

920937 bp

Guanine Count

784896 bp

Cytosine Count

777056 bp

Genome Length

3379354 bp

Protein-coding Genes

3430 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtp pyrophosphokinaseJCM10003_1843Not AvailablePositive1608071 - 160988869379.1
lsu ribosomal protein l17pJCM10003_1844Not AvailableNegative1610262 - 161068715562.7
dna-directed rna polymerase alpha subunitJCM10003_1845Not AvailableNegative1610772 - 161172535930.1
ssu ribosomal protein s4pJCM10003_1846Not AvailableNegative1611776 - 161219215490.9
ssu ribosomal protein s11pJCM10003_1847Not AvailableNegative1612498 - 161288713878.8
ssu ribosomal protein s13pJCM10003_1848Not AvailableNegative1612889 - 161327814643.0
translation initiation factor 1JCM10003_1849Not AvailableNegative1613437 - 16136558235.14
methionine aminopeptidaseJCM10003_1850Not AvailableNegative1613657 - 161445429116.0
preprotein translocase secy subunitJCM10003_1851Not AvailableNegative1614470 - 161581049159.5
lsu ribosomal protein l15pJCM10003_1852Not AvailableNegative1615815 - 161626115713.1

Displaying genes 1631 – 1640 of 3499 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

216 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 216 metabolites

Health Effects

No health effects information available for this bacterium.