Halorubrum distributum JCM 10247

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum distributum JCM 10247 is a rod-shaped archaeon notable for its single replicon, which is a characteristic that distinguishes its genomic structure. This organism possesses flagella, indicating its capability for motility, an important trait for navigating its saline or extreme environments where it may be found. The accession number for Halorubrum distributum is AOIW00000000.1, which provides a reference for its genomic data. This strain contributes to our understanding of the diversity within the Halorubrum genus, which is known for thriving in hypersaline conditions, such as salt lakes and salt flats. The presence of flagella suggests that Halorubrum distributum may play a role in its ecological niche by allowing it to move towards optimal conditions for growth and survival. This motility can be particularly advantageous in environments where nutrient availability or other conditions fluctuate. Overall, Halorubrum distributum JCM 10247 exemplifies adaptations seen in extremophiles, providing insights into the mechanisms that enable life in extreme saline environments. Its unique traits, such as rod shape, single replicon, and flagellar motility, contribute to our understanding of microbial life in extreme conditions and the evolutionary strategies that support survival in such habitats.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum distributum
StrainJCM 10247

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum distributum JCM 10247


Gene Summary

Adenine Count

539794 bp

Thymine Count

539539 bp

Guanine Count

1149849 bp

Cytosine Count

1146852 bp

Genome Length

3376225 bp

Protein-coding Genes

3232 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive951757 - 951806Not Available
IntegraseC473_04434Not AvailableNegative952039 - 95306139205.9
Hypothetical proteinC473_04439Not AvailableNegative953164 - 95364018344.2
Hypothetical proteinC473_04444Not AvailableNegative953637 - 95392410838.5
hypothetical proteinC473_04449Not AvailableNegative954977 - 95553421225.0
superfamily i dna and rna helicase and helicase subunits-like proteinC473_04454Not AvailableNegative956950 - 95788234842.4
C5 cytosine-specific dna methylaseC473_04459Not AvailableNegative961312 - 96338176558.8
hypothetical proteinC473_04464Not AvailableNegative965027 - 9652849869.66
hypothetical proteinC473_04469Not AvailableNegative965524 - 9657337495.8
Vp2C473_04474Not AvailablePositive966045 - 96653617251.7

Displaying genes 1 – 10 of 3295 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

45 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da

Displaying 1–10 of 45 metabolites

Health Effects

No health effects information available for this bacterium.