Halorubrum californiense DSM 19288

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum californiense DSM 19288 is a rod-shaped archaeon, characterized by its motility due to the presence of flagella. This structural feature enables the organism to navigate its environment, which is particularly significant in its natural habitats, often characterized by extreme saline conditions. The genome of Halorubrum californiense contains a single replicon, which is a defining characteristic of many archaeal species. This may influence its replication and genetic stability, allowing it to thrive in challenging environments. The organism is cataloged under the accession number AOJK00000000.1, which provides a reference for researchers seeking genomic information. In terms of ecological insight, Halorubrum californiense's adaptation to high-salinity environments underscores the versatility of archaeal life forms. Its motility, coupled with its genomic characteristics, suggests a competitive advantage in niche environments where resources may be limited. This adaptability may also play a role in its interactions with other microbial communities, contributing to the overall dynamics of extreme saline ecosystems. Understanding such traits can enhance our knowledge of microbial ecology and the evolutionary strategies employed by extremophiles.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum californiense
StrainDSM 19288

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum californiense DSM 19288 contig_83, whole genome shotgun

Gene Summary

Adenine Count

622251 bp

Thymine Count

622914 bp

Guanine Count

1214678 bp

Cytosine Count

1222823 bp

Genome Length

3682872 bp

Protein-coding Genes

3456 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sss sodium solute transporter superfamily proteinC463_17568Not AvailableNegative3639135 - 364054146749.2
htr-like proteinC463_17573Not AvailablePositive3640656 - 364196047210.2
putative transcriptional regulator containing an hth domain fused to a zn-ribbonC463_17578Not AvailableNegative3641977 - 364228811263.8
nucleotidyl transferaseC463_17583Not AvailablePositive3642402 - 364337635528.6
hypothetical proteinC463_17588Not AvailableNegative3643398 - 36436258168.05
trka-n domain proteinC463_17593Not AvailableNegative3643708 - 364517452204.5
Trna-lysNot AvailableNot AvailablePositive3645388 - 3645464Not Available
hypothetical proteinC463_17598Not AvailablePositive3645532 - 364587312898.8
transposase is4 family proteinC463_17603Not AvailablePositive3646216 - 364654712757.2
hypothetical proteinC463_17610Not AvailablePositive3646633 - 364767038381.3

Displaying genes 3471 – 3480 of 3502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.