Halorubrum californiense DSM 19288

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum californiense DSM 19288 is a rod-shaped archaeon, characterized by its motility due to the presence of flagella. This structural feature enables the organism to navigate its environment, which is particularly significant in its natural habitats, often characterized by extreme saline conditions. The genome of Halorubrum californiense contains a single replicon, which is a defining characteristic of many archaeal species. This may influence its replication and genetic stability, allowing it to thrive in challenging environments. The organism is cataloged under the accession number AOJK00000000.1, which provides a reference for researchers seeking genomic information. In terms of ecological insight, Halorubrum californiense's adaptation to high-salinity environments underscores the versatility of archaeal life forms. Its motility, coupled with its genomic characteristics, suggests a competitive advantage in niche environments where resources may be limited. This adaptability may also play a role in its interactions with other microbial communities, contributing to the overall dynamics of extreme saline ecosystems. Understanding such traits can enhance our knowledge of microbial ecology and the evolutionary strategies employed by extremophiles.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum californiense
StrainDSM 19288

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum californiense DSM 19288 contig_83, whole genome shotgun

Gene Summary

Adenine Count

622251 bp

Thymine Count

622914 bp

Guanine Count

1214678 bp

Cytosine Count

1222823 bp

Genome Length

3682872 bp

Protein-coding Genes

3456 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC463_10555Not AvailableNegative2161950 - 21621086419.79
transposase, is605 orfb family proteinC463_10560Not AvailablePositive2162141 - 216341849447.1
nucleoside-diphosphate-sugar epimerase (udp-glucose 4-epimerase)C463_10565Not AvailableNegative2163515 - 216442633760.7
transposase is4 family proteinC463_10570Not AvailableNegative2164858 - 216568231411.2
is1341-type transposase (tce32)C463_10575Not AvailableNegative2165817 - 216675835289.9
response regulator receiver proteinC463_10580Not AvailableNegative2167183 - 216755113657.2
glycosyl transferase family 2C463_10585Not AvailablePositive2168137 - 216936344661.2
hypothetical proteinC463_10590Not AvailablePositive2169908 - 217084336457.1
phosphoadenosine phosphosulfate reductaseC463_10595Not AvailableNegative2170844 - 21710407269.32
mut/nudix family proteinC463_10600Not AvailablePositive2171323 - 217176016281.0

Displaying genes 2091 – 2100 of 3502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.