Halorubrum californiense DSM 19288

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum californiense DSM 19288 is a rod-shaped archaeon, characterized by its motility due to the presence of flagella. This structural feature enables the organism to navigate its environment, which is particularly significant in its natural habitats, often characterized by extreme saline conditions. The genome of Halorubrum californiense contains a single replicon, which is a defining characteristic of many archaeal species. This may influence its replication and genetic stability, allowing it to thrive in challenging environments. The organism is cataloged under the accession number AOJK00000000.1, which provides a reference for researchers seeking genomic information. In terms of ecological insight, Halorubrum californiense's adaptation to high-salinity environments underscores the versatility of archaeal life forms. Its motility, coupled with its genomic characteristics, suggests a competitive advantage in niche environments where resources may be limited. This adaptability may also play a role in its interactions with other microbial communities, contributing to the overall dynamics of extreme saline ecosystems. Understanding such traits can enhance our knowledge of microbial ecology and the evolutionary strategies employed by extremophiles.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum californiense
StrainDSM 19288

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum californiense DSM 19288 contig_83, whole genome shotgun

Gene Summary

Adenine Count

622251 bp

Thymine Count

622914 bp

Guanine Count

1214678 bp

Cytosine Count

1222823 bp

Genome Length

3682872 bp

Protein-coding Genes

3456 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar transferaseC463_08809Not AvailableNegative1810705 - 181216853314.0
transposase (ish3)C463_08814Not AvailablePositive1812869 - 181392740329.4
transposase is4 family proteinC463_08819Not AvailablePositive1814649 - 181519420561.3
hypothetical proteinC463_08824Not AvailablePositive1817210 - 181786023433.8
cell surface glycoproteinC463_08829Not AvailablePositive1818536 - 182122094001.3
transcriptional regulator, abrb family proteinC463_08834Not AvailablePositive1822265 - 182254310627.3
hypothetical proteinC463_08839Not AvailablePositive1822540 - 182294114352.7
pyridoxamine 5'-phosphate oxidase-related fmn-binding proteinC463_08844Not AvailableNegative1822958 - 182341316929.6
is1341-type transposaseC463_08849Not AvailablePositive1823803 - 182519153230.8
hypothetical proteinC463_08854Not AvailableNegative1825223 - 18253604824.8

Displaying genes 1751 – 1760 of 3502 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.