Agrobacterium rhizogenes NBRC 13257

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes NBRC 13257 is a Gram-negative bacterium predominantly found in terrestrial habitats. This organism is characterized by its rod shape and possesses flagella, which confer mobility, allowing it to navigate its environment effectively. As an aerobe, A. rhizogenes requires oxygen for growth and metabolism, thriving optimally at a temperature of 25°C, within the mesophilic temperature range. The bacterium has a unique genomic structure, containing one replicon, and is surrounded by two membranes, which is typical of Gram-negative bacteria. Its accession number is BAYX00000000.1, indicating its classification within biological databases. A. rhizogenes is known for its role in plant-microbe interactions, particularly in inducing hairy root formation in plants. This trait is significant in the field of biotechnology, where it is utilized for the genetic transformation of plants, enabling the study of gene function and the development of genetically modified crops. The ecological insight provided by A. rhizogenes NBRC 13257 highlights its potential in promoting plant growth and resilience, as well as its application in sustainable agricultural practices. Its ability to thrive in terrestrial environments and interact with plant systems underscores the importance of microbial diversity in ecosystems and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes NBRC 13257
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rhizogenes NBRC 13257 DNA, contig: RRH01S53, whole

Gene Summary

Adenine Count

1405055 bp

Thymine Count

1418806 bp

Guanine Count

2122155 bp

Cytosine Count

2098457 bp

Genome Length

7044473 bp

Protein-coding Genes

6581 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative spermidine/putrescine abc transporter permease proteinRRH01S_09_02550Not AvailableNegative4644270 - 464508529473.8
putative spermidine/putrescine abc transporter permease proteinRRH01S_09_02560Not AvailableNegative4645089 - 464600334013.5
putative spermidine/putrescine abc transporter atp-binding proteinRRH01S_09_02570Not AvailableNegative4646003 - 464714842083.0
putative spermidine/putrescine abc transporter substrate-binding proteinRRH01S_09_02580Not AvailableNegative4647265 - 464836240459.0
putative lysr family transcriptional regulatorRRH01S_09_02590Not AvailableNegative4648556 - 464942832357.6
hypothetical proteinRRH01S_09_02600Not AvailablePositive4649517 - 464981611416.4
putative methyl-accepting chemotaxis proteinRRH01S_09_02610Not AvailableNegative4649747 - 465228492359.7
hypothetical proteinRRH01S_09_02620Not AvailableNegative4652946 - 465339815615.7
putative flavoproteinRRH01S_09_02630Not AvailableNegative4653532 - 465471642001.7
gamma-glutamylputrescine synthetaseRRH01S_09_02640Not AvailablePositive4654939 - 465628850123.5

Displaying genes 4461 – 4470 of 6682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.