Agrobacterium rhizogenes NBRC 13257

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Agrobacterium rhizogenes NBRC 13257 is a Gram-negative bacterium predominantly found in terrestrial habitats. This organism is characterized by its rod shape and possesses flagella, which confer mobility, allowing it to navigate its environment effectively. As an aerobe, A. rhizogenes requires oxygen for growth and metabolism, thriving optimally at a temperature of 25°C, within the mesophilic temperature range. The bacterium has a unique genomic structure, containing one replicon, and is surrounded by two membranes, which is typical of Gram-negative bacteria. Its accession number is BAYX00000000.1, indicating its classification within biological databases. A. rhizogenes is known for its role in plant-microbe interactions, particularly in inducing hairy root formation in plants. This trait is significant in the field of biotechnology, where it is utilized for the genetic transformation of plants, enabling the study of gene function and the development of genetically modified crops. The ecological insight provided by A. rhizogenes NBRC 13257 highlights its potential in promoting plant growth and resilience, as well as its application in sustainable agricultural practices. Its ability to thrive in terrestrial environments and interact with plant systems underscores the importance of microbial diversity in ecosystems and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium rhizogenes NBRC 13257
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium rhizogenes NBRC 13257 DNA, contig: RRH01S53, whole

Gene Summary

Adenine Count

1405055 bp

Thymine Count

1418806 bp

Guanine Count

2122155 bp

Cytosine Count

2098457 bp

Genome Length

7044473 bp

Protein-coding Genes

6581 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative amino acid efflux proteinRRH01S_04_02930Not AvailableNegative2315700 - 231640425032.2
putative short chain dehydrogenaseRRH01S_04_02940Not AvailableNegative2316406 - 231726030538.5
argininosuccinate ligaseRRH01S_04_02950Not AvailablePositive2317500 - 231872345272.2
putative marr family transcriptional regulatorRRH01S_04_02960Not AvailableNegative2318804 - 231928617697.5
putative amino acid efflux proteinRRH01S_04_02970Not AvailablePositive2319446 - 232008722380.1
peptidyl-dipeptidase dcpRRH01S_04_02980Not AvailablePositive2320185 - 232224875655.7
gtp-binding protein typaRRH01S_04_02990Not AvailablePositive2322431 - 232425766911.8
putative acetyltransferaseRRH01S_04_03000Not AvailablePositive2324464 - 232497019099.9
inorganic pyrophosphataseRRH01S_04_03010Not AvailablePositive2325097 - 232563319805.0
hypothetical proteinRRH01S_04_03020Not AvailableNegative2325634 - 232594811004.4

Displaying genes 2251 – 2260 of 6682 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da

Displaying 1–2 of 2 metabolites

Health Effects

No health effects information available for this bacterium.