Dehalogenimonas alkenigignens str. IP3-3

sphereanaerobic

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalogenimonas

Description

Dehalogenimonas alkenigignens str. IP3-3 is a Gram-negative, anaerobic bacterium characterized by its spherical shape. This organism is non-motile and possesses true flagella, although it does not utilize them for movement. The optimal growth temperature for D. alkenigignens is 32°C, placing it within the mesophilic temperature range. It has a single replicon and is classified as non-spore-forming. This bacterium's anaerobic nature suggests its ecological role in environments devoid of oxygen, such as sediments or other anoxic conditions. Its ability to thrive at a specific temperature range indicates a niche adaptation, potentially influencing its interactions with other microbial communities and its role in biogeochemical cycles. The presence of flagella, despite being non-motile, may have other functions, such as helping the bacterium in surface adherence or biofilm formation. Understanding the traits of D. alkenigignens can provide insights into its potential applications in bioremediation processes, particularly in the degradation of halogenated compounds in anaerobic environments. The accession number LFDV00000000.1 serves as a reference for further genetic and functional studies of this organism.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalogenimonas
SpeciesDehalogenimonas alkenigignens
StrainIP3-3

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Dehalogenimonas alkenigignens str. IP3-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalogenimonas alkenigignens strain IP3-3 contig00002, whole

Gene Summary

Adenine Count

408157 bp

Thymine Count

408044 bp

Guanine Count

517942 bp

Cytosine Count

515649 bp

Genome Length

1849792 bp

Protein-coding Genes

1932 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein translocase subunit sece/sec61 gammaDEALK_11880Not AvailablePositive1087839 - 10880908893.01
transcription antitermination protein nusgDEALK_11890Q9KGE7Positive1088120 - 108865320105.4
lsu ribosomal protein l11pDEALK_11900A5FQR2Positive1088676 - 108909814734.2
lsu ribosomal protein l1pDEALK_11910Q3Z7T4Positive1089100 - 108981325248.2
lsu ribosomal protein l10pDEALK_11920A5FQR0Positive1090015 - 109055419341.1
lsu ribosomal protein l12pDEALK_11930B8E0K0Positive1090585 - 109096512938.8
hypothetical proteinDEALK_11940Not AvailablePositive1091139 - 10913879169.35
hypothetical proteinDEALK_11950Not AvailableNegative1091390 - 109204623794.6
mg chelatase-related proteinDEALK_11960P45049Negative1092055 - 109358154920.9
nusa antitermination factorDEALK_11970P32727Positive1093825 - 109530653258.0

Displaying genes 1211 – 1220 of 1984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

96 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 96 metabolites

Health Effects

No health effects information available for this bacterium.