Dehalogenimonas alkenigignens str. IP3-3

sphereanaerobic

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Dehalococcoidia

Order

Dehalococcoidales

Family

Dehalococcoidaceae

Genus

Dehalogenimonas

Description

Dehalogenimonas alkenigignens str. IP3-3 is a Gram-negative, anaerobic bacterium characterized by its spherical shape. This organism is non-motile and possesses true flagella, although it does not utilize them for movement. The optimal growth temperature for D. alkenigignens is 32°C, placing it within the mesophilic temperature range. It has a single replicon and is classified as non-spore-forming. This bacterium's anaerobic nature suggests its ecological role in environments devoid of oxygen, such as sediments or other anoxic conditions. Its ability to thrive at a specific temperature range indicates a niche adaptation, potentially influencing its interactions with other microbial communities and its role in biogeochemical cycles. The presence of flagella, despite being non-motile, may have other functions, such as helping the bacterium in surface adherence or biofilm formation. Understanding the traits of D. alkenigignens can provide insights into its potential applications in bioremediation processes, particularly in the degradation of halogenated compounds in anaerobic environments. The accession number LFDV00000000.1 serves as a reference for further genetic and functional studies of this organism.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassDehalococcoidia
OrderDehalococcoidales
FamilyDehalococcoidaceae
GenusDehalogenimonas
SpeciesDehalogenimonas alkenigignens
StrainIP3-3

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Dehalogenimonas alkenigignens str. IP3-3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dehalogenimonas alkenigignens strain IP3-3 contig00002, whole

Gene Summary

Adenine Count

408157 bp

Thymine Count

408044 bp

Guanine Count

517942 bp

Cytosine Count

515649 bp

Genome Length

1849792 bp

Protein-coding Genes

1932 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptide/dipeptide abc transporter, atp-binding protein, c-terminal domainDEALK_11810P42065Positive1081849 - 108284136547.4
hypothetical proteinDEALK_11820Not AvailableNegative1082874 - 10830627023.95
protein involved in cellulose biosynthesis (celd)DEALK_11830Not AvailablePositive1083038 - 108403337242.0
glycosyltransferaseDEALK_11840Q6NJL3Positive1084030 - 108524143854.7
uncharacterized protein, lmbe familyDEALK_11850D6Y7M2Positive1085249 - 108594125827.9
Trna-thrNot AvailableNot AvailablePositive1086120 - 1086192Not Available
Trna-tyrNot AvailableNot AvailablePositive1086205 - 1086289Not Available
Trna-thrNot AvailableNot AvailablePositive1086342 - 1086417Not Available
translation elongation factor 1a (ef-1a/ef-tu)DEALK_11860A5FQQ5Positive1086451 - 108765343683.1
ribosomal protein l33, bacterial typeDEALK_11870Q3Z7T0Positive1087657 - 10878216533.97

Displaying genes 1201 – 1210 of 1984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

96 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 96 metabolites

Health Effects

No health effects information available for this bacterium.